View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18747_high_39 (Length: 257)
Name: NF18747_high_39
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18747_high_39 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 35 - 206
Target Start/End: Original strand, 17407929 - 17408100
Alignment:
| Q |
35 |
aacattctcaaacttgtgttaatatcttttacagttgtacaaaactcaggagaaatatctgcttgaccttcaaagggttgagggtgcccagcttcttttc |
134 |
Q |
| |
|
||||||||||||| | ||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||| |||||||| |
|
|
| T |
17407929 |
aacattctcaaacctatgttaatatctttcacagctgtacaaaactcaggagaaatatctgcttgatcttcaaaggcttgagggtccccagtttcttttc |
17408028 |
T |
|
| Q |
135 |
ttggatctttgttctgccttccttgcgcagcttcgcgttctctagtacaaagatagtacactcacatggggg |
206 |
Q |
| |
|
|||||||||||| | ||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
17408029 |
ttggatctttgtgccgccttccttgcacagcttcgcgttctctaatgcaaagatagtacactcacatggggg |
17408100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 35 - 212
Target Start/End: Complemental strand, 4049825 - 4049648
Alignment:
| Q |
35 |
aacattctcaaacttgtgttaatatcttttacagttgtacaaaactcaggagaaatatctgcttgaccttcaaagggttgagggtgcccagcttcttttc |
134 |
Q |
| |
|
||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||| ||||| |||||||| |
|
|
| T |
4049825 |
aacattctcaaacatttgttaatatcttttacagctgtacaaaactcaggagaaatatctgcttgatcttcaaagacttgagggaccccagtttcttttc |
4049726 |
T |
|
| Q |
135 |
ttggatctttgttctgccttccttgcgcagcttcgcgttctctagtacaaagatagtacactcacatgggggacttga |
212 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||| |||| | || ||||| |||||||||| ||||||||| |
|
|
| T |
4049725 |
ttggatctttgtgctgccttccttgcgcagcttcgtgttctgtagtgcgaatatagtgcactcacatgagggacttga |
4049648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 35 - 168
Target Start/End: Original strand, 17412546 - 17412678
Alignment:
| Q |
35 |
aacattctcaaacttgtgttaatatcttttacagttgtacaaaactcaggagaaatatctgcttgaccttcaaagggttgagggtgcccagcttcttttc |
134 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||| ||||| |||||||| ||||||| |||| || |||| |
|
|
| T |
17412546 |
aacattctcaag-ttgtgttaatatcttttgtagttgtacaaaactgaggagaaatatctacttgatattcaaaggcttgagggaccccaatttgctttc |
17412644 |
T |
|
| Q |
135 |
ttggatctttgttctgccttccttgcgcagcttc |
168 |
Q |
| |
|
|||||||||||| || ||||||||| || ||||| |
|
|
| T |
17412645 |
ttggatctttgtgcttccttccttgagcggcttc |
17412678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 61 - 240
Target Start/End: Complemental strand, 2783518 - 2783337
Alignment:
| Q |
61 |
ttttacagttgtacaaaactcaggagaaatatctgcttgaccttcaaagggttgagggtgcccagcttcttttcttggatctttgttctgccttccttgc |
160 |
Q |
| |
|
|||||||| | ||||||||||||||||| |||||| |||| |||||||||||||||| | ||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
2783518 |
ttttacagctctacaaaactcaggagaagtatctgtttgatcttcaaagggttgaggatccccagtttcttttcttggatctttgtgttgccttccttgc |
2783419 |
T |
|
| Q |
161 |
gcagcttcgcgttctctagtacaaagatag----tacactcacatgggggacttgaggtgtattatgttgcatgtgaataagct |
240 |
Q |
| |
|
||||||||| |||||||||| ||||| ||| | | ||||||| |||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
2783418 |
gcagcttcgtgttctctagtgcaaagctagggaattaagtcacatgagggacttgaggtttattatgttgc--gtgaataagct |
2783337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University