View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18747_high_40 (Length: 255)
Name: NF18747_high_40
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18747_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 28725373 - 28725604
Alignment:
| Q |
7 |
atattattattatcaggtgggtcaattatcttcaactcattaactatctacaacatcattgaatggagacgatgtttgttcaacaagtaatcttattttc |
106 |
Q |
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| T |
28725373 |
atattattattatcaggtgggtcaattatcttcaactcattaactatctacaacatcattgaatggagacgatgtttgttcaacaagtaatcttattttc |
28725472 |
T |
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| Q |
107 |
tggtgaagatatatggcttactttgtagaattaattgcttgcttcttttagatttagaataatcgattagtatttgaggttattctaatatggaggaact |
206 |
Q |
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| T |
28725473 |
tggtgaagat----ggcttactttgtagaattaattgcttgcttcttttagatttagaataatcgattagtatttgaggttattctaatatggaggaact |
28725568 |
T |
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| Q |
207 |
taaatgtaagcattgtctctatatttgtttagtttc |
242 |
Q |
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| T |
28725569 |
taaatgtaagcattgtctctatatttgtttagtttc |
28725604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 156
Target Start/End: Original strand, 28727870 - 28728005
Alignment:
| Q |
16 |
ttatcaggtgggtcaattatcttcaactcattaactatctacaacatcattgaatggagacgatgtttgttcaacaagt-aatcttattttctggtgaag |
114 |
Q |
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| T |
28727870 |
ttatcaggtgagtcaatcatcttcaactca--aactatctccaacatctttgaatggagacgatgattgtttaacaatttaatcttatttactgttgaag |
28727967 |
T |
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| Q |
115 |
atatatggcttactttgtagaattaattgcttgcttctttta |
156 |
Q |
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| T |
28727968 |
at----ggcttactttatagaattaattacttgcttctttta |
28728005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 156
Target Start/End: Original strand, 28734084 - 28734221
Alignment:
| Q |
16 |
ttatcaggtgggtcaattatcttcaactcattaactatctacaacatcattgaatggagacgatgtttgttcaacaa-gtaatcttattttctggtgaag |
114 |
Q |
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|||||||||| |||||| ||||||| |||| ||||||||||| ||| ||||||||||||||||| ||||| ||||| ||||||||||| ||| ||||| |
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| T |
28734084 |
ttatcaggtgagtcaatcatcttcagctca--aactatctacagcattattgaatggagacgatgattgtttaacaatttaatcttatttactgttgaag |
28734181 |
T |
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| Q |
115 |
atatatggcttac--tttgtagaattaattgcttgcttctttta |
156 |
Q |
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| T |
28734182 |
----atggcttactttttatagaattaattacttgcttctttta |
28734221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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