View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18747_high_41 (Length: 253)
Name: NF18747_high_41
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18747_high_41 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 52404802 - 52405021
Alignment:
| Q |
11 |
catcatcaatgatagcatgcatgagagtgcttttccctgataatagagattgcaaaattagcagagattaaaagagcatacaaatataacattactatag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
52404802 |
catcatcaatgatagcatgcatgagagtgcttttccctgataatagagattgcaaagttagcagagattaaaggagcatacaaatataacattactatag |
52404901 |
T |
|
| Q |
111 |
atgcatacaaatattaaaagaattcaattgattttttcaagtatacaaagaaaagtaaaactcacttcgacaatatatatttgaaccagacaagttgaca |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
52404902 |
atgcatacaaatattaaaagaattcaattgattttttcaagtatacaaagaaaagtaaaacccacttcgaca----atatttgaaccagacaagttgaca |
52404997 |
T |
|
| Q |
211 |
ttcctccacaaccagagtacaaat |
234 |
Q |
| |
|
|||||||||| |||||||| |||| |
|
|
| T |
52404998 |
ttcctccacagccagagtataaat |
52405021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 52415586 - 52415661
Alignment:
| Q |
29 |
gcatgagagtgcttttccctgataatagagattgcaaaattagcagagattaaaagagcatacaaatataacatta |
104 |
Q |
| |
|
||||||| | ||||||||||| |||||||||||||||| |||||||||||||||||| |||| ||| ||||||||| |
|
|
| T |
52415586 |
gcatgagggagcttttccctggtaatagagattgcaaagttagcagagattaaaagaacatataaaaataacatta |
52415661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 234
Target Start/End: Complemental strand, 28214799 - 28214768
Alignment:
| Q |
203 |
agttgacattcctccacaaccagagtacaaat |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
28214799 |
agttgacattcctccacaaccagagtacaaat |
28214768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University