View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18747_high_50 (Length: 235)
Name: NF18747_high_50
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18747_high_50 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 43226608 - 43226815
Alignment:
| Q |
16 |
atttcatcaactccacacaccttctcattgaaaattcgatcatttctcatcttctaaaccacccacacgacggcgtgccaaattaaccaagcccctcgtc |
115 |
Q |
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| T |
43226608 |
atttcatcaactccacacaccttctcattaaatatgcgatcaattctcatcttctaaaccacccacacgacggcgtgccaaattaaccaagcccctcgtc |
43226707 |
T |
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| Q |
116 |
taagctttttagaccgcacctcactcatccaacaagtagcatgaataaacaaattgggatgtgtgataaaactaaaattcagccacctcatcacctccgt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43226708 |
taagctttttagaccgcacctcactcatccaacaagtagcatgaataaacaaattgggatgtgtgataaaactaaaattcagccacctcatcacctccgt |
43226807 |
T |
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| Q |
216 |
ccacacct |
223 |
Q |
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|||||||| |
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| T |
43226808 |
ccacacct |
43226815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 71 - 150
Target Start/End: Complemental strand, 15623223 - 15623144
Alignment:
| Q |
71 |
aaaccacccacacgacggcgtgccaaattaaccaagcccctcgtctaagctttttagaccgcacctcactcatccaacaa |
150 |
Q |
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| T |
15623223 |
aaaccacccaaatgaccgcatgccaaattaaccacgcccctcgtctaagctttttagaccacacctcccttgtccaacaa |
15623144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 71 - 150
Target Start/End: Complemental strand, 15647012 - 15646933
Alignment:
| Q |
71 |
aaaccacccacacgacggcgtgccaaattaaccaagcccctcgtctaagctttttagaccgcacctcactcatccaacaa |
150 |
Q |
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| T |
15647012 |
aaaccacccaaatgaccgcatgccaaattaaccacgcccctcgtctaagctttttagaccacacctcccttgtccaacaa |
15646933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 223
Target Start/End: Complemental strand, 655248 - 655116
Alignment:
| Q |
91 |
tgccaaattaaccaagcccctcgtctaagctttttagaccgcacctcactcatccaacaagtagcatgaataaacaaattgggatgtgtgataaaactaa |
190 |
Q |
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|||||||||||||| ||||| || |||||||| || |||| ||||| || ||||||| || ||||||| ||| || ||| | ||||||||| ||| |
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| T |
655248 |
tgccaaattaaccacgccccgcgcctaagcttctttgaccaaacctccctagcccaacaaataacatgaatgaacgggtttggaggggtgataaaattaa |
655149 |
T |
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| Q |
191 |
aattcagccacctcatcacctccgtccacacct |
223 |
Q |
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|||||| |||| |||| |||| | ||||||||| |
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| T |
655148 |
aattcaaccacttcattaccttcctccacacct |
655116 |
T |
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