View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18747_high_6 (Length: 542)
Name: NF18747_high_6
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18747_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 5e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 361 - 524
Target Start/End: Complemental strand, 50605307 - 50605144
Alignment:
| Q |
361 |
tggtggatgaatcaaatgcttatcatccttaacttgtctaccatccgccacttcaaacaagccagtgacaagtagaatattgcacaggatgaaagcaacc |
460 |
Q |
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| T |
50605307 |
tggtggatgaatcaaatgcttatcatccttaacttgtctaccatccgccacttcaaacaagccagtgacaagtagaatattgcacaggatgaaagcaacc |
50605208 |
T |
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| Q |
461 |
acaacgccattagaaaaaactctcattgttagcgaacttaatgaatgtgtagtattgaaggaag |
524 |
Q |
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| T |
50605207 |
acaacgccattagaaaaaactctcattgttagtgaacttaatgaatgtgtagtattgaaggaag |
50605144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 335 - 372
Target Start/End: Complemental strand, 50605348 - 50605311
Alignment:
| Q |
335 |
tgtttgaatccgtgacctaacaaatgtggtggatgaat |
372 |
Q |
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| T |
50605348 |
tgtttgaatccgtgacctaacaaatgtggtggatgaat |
50605311 |
T |
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