View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18747_high_7 (Length: 525)
Name: NF18747_high_7
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18747_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 474; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 16 - 521
Target Start/End: Complemental strand, 11225131 - 11224626
Alignment:
| Q |
16 |
catgaacaacatataatcaaccaacatgccttaaagtatacttacatccatctttttcaattaatttgcagaatctttttcaattaaacaatcagcttac |
115 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11225131 |
catgaacaacatataatcaaccaacacgccttaaagtatacttacatccatctttttcaattaatttgcagaatctttttcaattaaacaatcagcttac |
11225032 |
T |
|
| Q |
116 |
attcagataaacattaaacaatcaatttcagaattttgattttgtaatcagttcgcagaatatttcaacaatgtgtaactcttatactacatgcacaaca |
215 |
Q |
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| T |
11225031 |
aatcaggtaaacattaaacaatcaatttcagaattttgattttgtaatcagttcgcagaatatttcaacaatgtgtaactcttatactacatgcacaaca |
11224932 |
T |
|
| Q |
216 |
tttaatgaacttaacacacccaaaagtatacttacagctatagcttttccttcttcgttcacataatttccatcattctttattaaagttgacaaaataa |
315 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11224931 |
tttaatcaacttaacacacccaaaagtatacttacaactattgcttttccttcttcgttcacataatttccatcattctttattaaagttgacaaaataa |
11224832 |
T |
|
| Q |
316 |
cctcgcttcgacatacaggccttcctaattgttgttcctaacatcataaataaaatgtaaattaagaactcatcaataacagctctgttgggatacataa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11224831 |
cctcgcttcgacatacaggccttcctaattgttgttcctaacatcataaataaaatgtaaattaagaactcatcaataacagctttgttgggatacataa |
11224732 |
T |
|
| Q |
416 |
atattttgaatctgcttaccattagacgaccccttcttgcgttgctcctactaccaccagcatgtgggagtttaagcttcttacgattttcggtattctt |
515 |
Q |
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| T |
11224731 |
atattttgaatctgcttaccattagacgaccccttcttgcgttgctcctactaccaccagcatgtgggactttaagcttcttacgattttcggtattctt |
11224632 |
T |
|
| Q |
516 |
ctcact |
521 |
Q |
| |
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|||||| |
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| T |
11224631 |
ctcact |
11224626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 11225484 - 11225243
Alignment:
| Q |
16 |
catgaacaacatataatcaaccaacatgccttaaagtatacttacatccatctttttcaattaatttgcagaatctttttcaattaaacaatcagcttac |
115 |
Q |
| |
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|||| ||||||| ||||||||||||| || |||||||||||||| | || ||||||||| || |||||||||| |||| ||||||| ||||||||||| |
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| T |
11225484 |
catgcacaacatttaatcaaccaacacacccaaaagtatacttacagctatatttttcaatcaacttgcagaatccttttgaattaaataatcagcttac |
11225385 |
T |
|
| Q |
116 |
attcagataaacattaaacaatcaatt-tcagaattttgattttgtaatcagttcgcagaatatt-tcaacaatgtgtaactcttatactacatgcacaa |
213 |
Q |
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| T |
11225384 |
attcaggtacacattaaacaatcagttcacaaaattttgattttacaatcagtttccagaattttatcaacaatgtgcaacacttatagtacatgcataa |
11225285 |
T |
|
| Q |
214 |
catttaatgaacttaacacacccaaaagtatacttacagctat |
256 |
Q |
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| T |
11225284 |
catttaatcaa-tcaacacacccaaaagtatatttacagctat |
11225243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 99 - 257
Target Start/End: Complemental strand, 11225592 - 11225433
Alignment:
| Q |
99 |
ttaaacaatcagcttacattcagataaacattaaacaatcaattt-cagaattttgattttgtaatcagttcgcagaatatt-tcaacaatgtgtaactc |
196 |
Q |
| |
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||||||||||| |||||| ||||| | |||| ||||||||| || || |||||||||||| ||||||||| |||||| || |||| |||| ||||| | |
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| T |
11225592 |
ttaaacaatcaacttacaatcagaaatacatcaaacaatcagttcgcataattttgattttacaatcagttctcagaattttgtcaagaatgcgtaacac |
11225493 |
T |
|
| Q |
197 |
ttatactacatgcacaacatttaatgaacttaacacacccaaaagtatacttacagctata |
257 |
Q |
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|| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
11225492 |
ttgtactacatgcacaacatttaatcaacc-aacacacccaaaagtatacttacagctata |
11225433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 165 - 251
Target Start/End: Complemental strand, 11225171 - 11225086
Alignment:
| Q |
165 |
agttcgcagaatatttcaacaatgtgtaactcttatactacatgcacaacatttaatgaacttaacacacccaaaagtatacttaca |
251 |
Q |
| |
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|||||||||||| | ||||||||||||||||||||||||||||| ||||||| |||| ||| ||||| || |||||||||||||| |
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| T |
11225171 |
agttcgcagaatttatcaacaatgtgtaactcttatactacatgaacaacatataatcaac-caacacgccttaaagtatacttaca |
11225086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 23 - 135
Target Start/End: Complemental strand, 11225286 - 11225174
Alignment:
| Q |
23 |
aacatataatcaaccaacatgccttaaagtatacttacatccatctttttcaattaatttgcagaatctttttcaattaaacaatcagcttacattcaga |
122 |
Q |
| |
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||||| ||||||| ||||| || |||||||| ||||| | ||||||||| || | ||||||||||| ||||||||||||||| || ||||||||||| |
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| T |
11225286 |
aacatttaatcaatcaacacacccaaaagtatatttacagctatctttttccatcagtttgcagaatccttttcaattaaacaaccaacttacattcagg |
11225187 |
T |
|
| Q |
123 |
taaacattaaaca |
135 |
Q |
| |
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|| |||| ||||| |
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| T |
11225186 |
tacacatcaaaca |
11225174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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