View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18747_low_11 (Length: 522)
Name: NF18747_low_11
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18747_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 11 - 275
Target Start/End: Complemental strand, 4954028 - 4953764
Alignment:
| Q |
11 |
catcatcaactaccctccaatgaattgcgaaaacctgtcaccccagatcatcttaaacttcccaaaccattcaaatatcctgaaaggtatctaccttgtc |
110 |
Q |
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| T |
4954028 |
catcatcaactaccctccaatgaattgcgaaaacctgtcaccccagatcatctcaaactccccaaaccattcaaatatcctgaaaggtatctaccttgtc |
4953929 |
T |
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| Q |
111 |
ttttatattagattctctgtaatcacgcaattccataaagatctgatggctcatatttcgagttgtattttaaagttgattcagtgatggttaagactgc |
210 |
Q |
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| T |
4953928 |
ttttatattagattatctgtaatcacgcaattccataaagatctgacagctcatatttcgagttgtattttaaagttgattcagtgatggttaagactgt |
4953829 |
T |
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| Q |
211 |
gtgcttgtttgaattgattttgacatgttttatgttatatggtagtttaattgattgttttggta |
275 |
Q |
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| T |
4953828 |
gtgcttgtttgaattgattttgacatgttttatgttatctggtagtttaattgattgtttcggta |
4953764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 275
Target Start/End: Complemental strand, 4938319 - 4938055
Alignment:
| Q |
11 |
catcatcaactaccctccaatgaattgcgaaaacctgtcaccccagatcatcttaaacttcccaaaccattcaaatatcctgaaaggtatctaccttgtc |
110 |
Q |
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| T |
4938319 |
catcatcaactaccctccaatgaattgcgaaaacctgtcaccccatatcatctcaaactccccaaaccattcaaatatcttgaaaggtatctaccttgtc |
4938220 |
T |
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| Q |
111 |
ttttatattagattctctgtaatcacgcaattccataaagatctgatggctcatatttcgagttgtattttaaagttgattcagtgatggttaagactgc |
210 |
Q |
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| T |
4938219 |
ttttatattagattctctgtaatgacgcaattccataaagatccgacggctcatatttcgagttgtattttaaagttgattcagtgatggttaagactgc |
4938120 |
T |
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| Q |
211 |
gtgcttgtttgaattgattttgacatgttttatgttatatggtagtttaattgattgttttggta |
275 |
Q |
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| T |
4938119 |
gtgcttatttgaattgattttgacatgttttatgttatctggtagtttaattgattgtttcggta |
4938055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 339 - 517
Target Start/End: Complemental strand, 4937991 - 4937813
Alignment:
| Q |
339 |
tcaaaagtaaatcacttttatgttgaaaccaattttaaagaatttatacattcaaaatcaatttttgtgtccatagttgggttagtgaatgaatatctat |
438 |
Q |
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| T |
4937991 |
tcaaaagtaaatcacttttatgttgaaaccaattttaaagaatttatacattcaaaatcaatttttgtgtccttagttgggttagtgaatgaatatctat |
4937892 |
T |
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| Q |
439 |
ctatcattatgtgttggctaattgttcttttttacttcattttgttaggtatacaagcccaactgatatgatgatgtcc |
517 |
Q |
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| T |
4937891 |
ctatcattatgtgttggctaattgttattttttacttcattttgttaggtatacaagcccaactgatatgatgatgtcc |
4937813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 339 - 517
Target Start/End: Complemental strand, 4953700 - 4953522
Alignment:
| Q |
339 |
tcaaaagtaaatcacttttatgttgaaaccaattttaaagaatttatacattcaaaatcaatttttgtgtccatagttgggttagtgaatgaatatctat |
438 |
Q |
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| T |
4953700 |
tcaaaagtaaatcacttttatgttgaaaccaattttaaagaatttatacattcaaaatcaatttttgtgtccttagttgggttagtgaatgaatatctat |
4953601 |
T |
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| Q |
439 |
ctatcattatgtgttggctaattgttcttttttacttcattttgttaggtatacaagcccaactgatatgatgatgtcc |
517 |
Q |
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| T |
4953600 |
ctatcattatgtgttggctaattgtttttttttacttcattttgttaggtatacaagcccaactgatatgatgatgtcc |
4953522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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