View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18747_low_12 (Length: 521)
Name: NF18747_low_12
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18747_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 20 - 411
Target Start/End: Complemental strand, 38121288 - 38120897
Alignment:
| Q |
20 |
agcaatgtgcgattccatatcataccgaatcattacttgtctatcgctgatcttgaaaagcttccagttggaactgctctgcctacattggagcgaggtc |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38121288 |
agcaatgtgcgattccatatcataccgaatcattacttgtcaatcgccgatcttgagaagcttccggttggaactgctctgcctacattggagcgaggtc |
38121189 |
T |
|
| Q |
120 |
agccgcttctgatcactacttccggtggaggagtggcatcagcgccaatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaa |
219 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38121188 |
agccgcttctgatcactacttccggcggaggagtgacatcagcgccgatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaa |
38121089 |
T |
|
| Q |
220 |
gatagttgtgcacagtgtgtatttgccttttccgcatatcaatcctattgcggctgcttatgatactatcttaggaggtgaaggagcattggaaggagcg |
319 |
Q |
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||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38121088 |
gattgttgtgcacagcgtgtatttgccttttccgcatatcaatcctattgcggctgcttatgatactatcttaggaggtgaaggagcatcggaaggagcg |
38120989 |
T |
|
| Q |
320 |
ggtgtcggagccagagctgctactgtatcagattctgctggtcaggcgacggaagaatcctgctctgctcttgatggacgtggtgtttgtgc |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||| |||||| |
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| T |
38120988 |
ggtgtcggagccagagctgctactgtatcagattctgctggtcaggccacggaagaaacctgctctgctcctgatggacgtggtggttgtgc |
38120897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 20 - 411
Target Start/End: Original strand, 38608835 - 38609226
Alignment:
| Q |
20 |
agcaatgtgcgattccatatcataccgaatcattacttgtctatcgctgatcttgaaaagcttccagttggaactgctctgcctacattggagcgaggtc |
119 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38608835 |
agcaatgtgcgattccatatcataccgaattattacttgtcgatcgccgatcttgagaagcttccagttggaactgctctgcctacattggagcgaggtc |
38608934 |
T |
|
| Q |
120 |
agccgcttctgatcactacttccggtggaggagtggcatcagcgccaatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaa |
219 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38608935 |
agccgcttctgatcactacttccggcggaggagtgacatcagcgccgatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaa |
38609034 |
T |
|
| Q |
220 |
gatagttgtgcacagtgtgtatttgccttttccgcatatcaatcctattgcggctgcttatgatactatcttaggaggtgaaggagcattggaaggagcg |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||| |
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| T |
38609035 |
gatagttgtgcacagtgtgtatttgccttttccgcatatcaatcctattgcggctgcttatgatactatattaggaggtgaaggagcgtcggaaggagca |
38609134 |
T |
|
| Q |
320 |
ggtgtcggagccagagctgctactgtatcagattctgctggtcaggcgacggaagaatcctgctctgctcttgatggacgtggtgtttgtgc |
411 |
Q |
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||||| |||||| |||| | ||| ||| ||||||| | |||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
38609135 |
ggtgttggagccggagcatcaactttattagattctccaggtcaggcgacggaagaaacctgctctgctcttgatggacgtggtggttgtgc |
38609226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 20 - 411
Target Start/End: Original strand, 38793618 - 38794009
Alignment:
| Q |
20 |
agcaatgtgcgattccatatcataccgaatcattacttgtctatcgctgatcttgaaaagcttccagttggaactgctctgcctacattggagcgaggtc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38793618 |
agcaatgtgcgattccatatcataccgaattattacttgtcgatcgccgatcttgagaagcttccagttggaactgctctgcctacattggagcgaggtc |
38793717 |
T |
|
| Q |
120 |
agccgcttctgatcactacttccggtggaggagtggcatcagcgccaatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaa |
219 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38793718 |
agccgcttctgatcactacttccggcggaggagtgacatcagcgccgatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaa |
38793817 |
T |
|
| Q |
220 |
gatagttgtgcacagtgtgtatttgccttttccgcatatcaatcctattgcggctgcttatgatactatcttaggaggtgaaggagcattggaaggagcg |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||| |
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| T |
38793818 |
gatagttgtgcacagtgtgtatttgccttttccgcatatcaatcctattgcggctgcttatgatactatattaggaggtgaaggagcgtcggaaggagca |
38793917 |
T |
|
| Q |
320 |
ggtgtcggagccagagctgctactgtatcagattctgctggtcaggcgacggaagaatcctgctctgctcttgatggacgtggtgtttgtgc |
411 |
Q |
| |
|
||||| |||||| |||| | ||| ||| ||||||| | |||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
38793918 |
ggtgttggagccggagcatcaactttattagattctccaggtcaggcgacggaagaaacctgctctgctcttgatggacgtggtggttgtgc |
38794009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 401 - 512
Target Start/End: Complemental strand, 38613722 - 38613611
Alignment:
| Q |
401 |
ggtgtttgtgcaatgtatttaagaccctgcaggtgaaaacggagattacaatgagtatcaagtttaaaattactcataattttgaaacctgggaccagag |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38613722 |
ggtgtttgtgcaatgtatttaagaccctgcaggtgaaaacggagattacaatgagtatcaagtttaaaattactcataattttgaaagctgggaccagag |
38613623 |
T |
|
| Q |
501 |
atgatgatgatg |
512 |
Q |
| |
|
| |||||||||| |
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| T |
38613622 |
aagatgatgatg |
38613611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 20 - 404
Target Start/End: Complemental strand, 28730862 - 28730478
Alignment:
| Q |
20 |
agcaatgtgcgattccatatcataccgaatcattacttgtctatcgctgatcttgaaaagcttccagttggaactgctctgcctacattggagcgaggtc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28730862 |
agcaatgtgcgattccatatcataccgaatcgttacttgtcaatcgccgatcttgagaagcttccagttggaactgctctgcctacattggagcgaggtc |
28730763 |
T |
|
| Q |
120 |
agccgcttctgatcactacttccggtggaggagtggcatcagcgccaatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaa |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||| || ||||||||||||||||| || || |||||||||||||||||||| |||||||| |
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|
| T |
28730762 |
agccgcttctgatcactacttccggtggaggagtgacattagcaccgatgaggattaactatgttagggtgaaggttgctgacgtcatccgtaatgtgaa |
28730663 |
T |
|
| Q |
220 |
gatagttgtgcacagtgtgtatttgccttttccgcatatcaatcctattgcggctgcttatgatactatcttaggaggtgaaggagcattggaaggagcg |
319 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
28730662 |
gatagttgtgcatagtgtgtatttgccttttccgcatatcaatcctattgcggatgcttatgatactatcttaggaggtgaaggagcatcggaaggagca |
28730563 |
T |
|
| Q |
320 |
ggtgtcggagccagagctgctactgtatcagattctgctggtcaggcgacggaagaatcctgctctgctcttgatggacgtggtg |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||| |
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| T |
28730562 |
ggtgtcggagccagagctgctactgtatcagattctgctggtcaggcgactgaagaaacctgctctgctcttgatgggcgtggtg |
28730478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 265
Target Start/End: Complemental strand, 18224426 - 18224363
Alignment:
| Q |
202 |
cgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgcatatcaatcct |
265 |
Q |
| |
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|||||||||||| || ||||| || |||||||||||||| ||||| ||||| ||||| |||||| |
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| T |
18224426 |
cgtcatccgcaacgtcaagatcgtcgtgcacagtgtgtacttgccatttccacatattaatcct |
18224363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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