View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18747_low_14 (Length: 493)
Name: NF18747_low_14
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18747_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 18 - 483
Target Start/End: Complemental strand, 6971178 - 6970713
Alignment:
| Q |
18 |
tggaggaccataaagtaaataacctcttttccaagcccttccaattcttgcatagaattcaccagctttactaaatgtaataagatcatcaatgatcatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6971178 |
tggaggaccataaagtaaataacctcttttccaagcccttccaattcttgcatagaattcaccagctttactaaatgtaataagatcatcaatgatcatt |
6971079 |
T |
|
| Q |
118 |
ttcttcttctcgaaatccatagctaatgtttcaaatgttgaaggatgttcaaacacaacatggctccaataagatccactattagtataaagtttccttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6971078 |
ttcttcttctcgaaatccatagctaatgtttcaaatgttgaaggatgttcaaacacaacatggctccaataagatccactattagtataaagtttccttt |
6970979 |
T |
|
| Q |
218 |
gtctatttttcaccttaattgctttaccttcttttagtacataattaagatatgtacctaaaatcacatctctattatgtttatgaaaagttaatttata |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6970978 |
gtctatttttcaccttaattgctttaccttcttttagtacataattaagatatgtacctaaaatcacatctctattatgtttatgaaaagttaatttata |
6970879 |
T |
|
| Q |
318 |
gtaccttttttcatctatgttgtgatgaagtgaaaatgaatttggtttggatatatttttgccactagcccaccaaagtttaactccattgaattcatca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6970878 |
gtaccttttttcatctatgttgtgatgaagtgaaaatgaatttggtttggatatatttttgccactagcccaccaaagtttaactccattgaattcatca |
6970779 |
T |
|
| Q |
418 |
cctacttcttcatgatcatccatgctaagaacaagtgcttgattattcttagctatgtcacctttg |
483 |
Q |
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| T |
6970778 |
cctacttcttcatgatcatccatgctaagaacaagtgcttgattattcttagctatgtcacctttg |
6970713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 483
Target Start/End: Complemental strand, 11449927 - 11449462
Alignment:
| Q |
18 |
tggaggaccataaagtaaataacctcttttccaagcccttccaattcttgcatagaattcaccagctttactaaatgtaataagatcatcaatgatcatt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
11449927 |
tggaggaccataaagtaaataacctcttttccatgcccttccaattcttgcatagaattcaccagctttactaaatgtaatgagatcatcaattatcatt |
11449828 |
T |
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| Q |
118 |
ttcttcttctcgaaatccatagctaatgtttcaaatgttgaaggatgttcaaacacaacatggctccaataagatccactattagtataaagtttccttt |
217 |
Q |
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| ||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11449827 |
tccttcttctctaaatccatagctaatgtttcaaatgttgatggatgctcaaatacaacatggctccaatgagatccactattagtataaagtttccttt |
11449728 |
T |
|
| Q |
218 |
gtctatttttcaccttaattgctttaccttcttttagtacataattaagatatgtacctaaaatcacatctctattatgtttatgaaaagttaatttata |
317 |
Q |
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||||||||||||| | |||||||||||||||||||||||||| |||||||| | |||||||||||||||||||| |||||||| ||||| | |||||| |
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| T |
11449727 |
gtctatttttcacttgaattgctttaccttcttttagtacatggctaagatatttccctaaaatcacatctctattgtgtttatggaaagtgagtttata |
11449628 |
T |
|
| Q |
318 |
gtaccttttttcatctatgttgtgatgaagtgaaaatgaatttggtttggatatatttttgccactagcccaccaaagtttaactccattgaattcatca |
417 |
Q |
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||||||||||||||||||||| ||||||||||||| |||||||| |||||| ||||||||||| |||||||||||||| | |||||||||||||||| |
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| T |
11449627 |
gtaccttttttcatctatgttttgatgaagtgaaattgaatttgagttggatgcttttttgccactggcccaccaaagtttcattccattgaattcatca |
11449528 |
T |
|
| Q |
418 |
cctacttcttcatgatcatccatgctaagaacaagtgcttgattattcttagctatgtcacctttg |
483 |
Q |
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| || |||||| | ||||||||||||||||| ||| | |||||||||||| ||||||||||||||| |
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| T |
11449527 |
catatttcttctttatcatccatgctaagaataagggattgattattcttggctatgtcacctttg |
11449462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 53395533 - 53395495
Alignment:
| Q |
18 |
tggaggaccataaagtaaataacctcttttccaagccct |
56 |
Q |
| |
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||||||||||||||| | ||||||||||||||||||||| |
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| T |
53395533 |
tggaggaccataaagaagataacctcttttccaagccct |
53395495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 1800848 - 1800795
Alignment:
| Q |
18 |
tggaggaccataaagtaaataacctcttttccaagcccttccaattcttgcata |
71 |
Q |
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|||||||||||||||||||||||| | |||||||||| | || ||| ||||||| |
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| T |
1800848 |
tggaggaccataaagtaaataaccgcgtttccaagccttaccgatttttgcata |
1800795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 8043749 - 8043713
Alignment:
| Q |
133 |
tccatagctaatgtttcaaatgttgaaggatgttcaa |
169 |
Q |
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|||||||| | |||||||||||||||||||||||||| |
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| T |
8043749 |
tccatagcaagtgtttcaaatgttgaaggatgttcaa |
8043713 |
T |
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