View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18747_low_20 (Length: 462)
Name: NF18747_low_20
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18747_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 8 - 447
Target Start/End: Original strand, 46314863 - 46315302
Alignment:
| Q |
8 |
agagatgaaacaacctgctggtcgtcgtcttttgaaggaaagtgttgatggagaagaggatgttttaggtcatggtggtgattttgagcttcctgagtgg |
107 |
Q |
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| T |
46314863 |
agagatgaaacaacctgctggtcgtcgtcttttgaaggaaagtgttgatggagaagaggatgttttaggtcatggtggtgattttgagcttcctgagtgg |
46314962 |
T |
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| Q |
108 |
gttgatgaccgtgccggtgttaggaaacttcttaataaaatgactggaaggaaacttcaggctcatgttgttgttgctaaggatggaagtggaaatttca |
207 |
Q |
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| T |
46314963 |
gttgatgaccgtgccggtgttaggaaacttcttaataaaatgactggaaggaaacttcaggctcatgttgttgttgctaaggatggaagtggaaatttca |
46315062 |
T |
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| Q |
208 |
ccacaatcactgaggctcttaagcatgttcccaagaaaaacttgaagccatttgttatttacatcaaggagggtgtttataaagagtatgttgaagttac |
307 |
Q |
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| T |
46315063 |
ccacaatcactgaggctcttaagcatgttcccaagaaaaacttgaagccatttgttatttacatcaaggagggtgtttataaagagtatgttgaagttac |
46315162 |
T |
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| Q |
308 |
taaaaccatgactcacgttgttttcattggtgatggtggtagaaagacacgcattacgggcaataaaaacttcattgatggagtcggtaccttcaaaacc |
407 |
Q |
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| T |
46315163 |
taaaaccatgactcacgttgttttcatcggtgatggtggtagaaagacacgcattacgggcaataaaaacttcattgatggagttggtaccttcaaaacc |
46315262 |
T |
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| Q |
408 |
gctagcgttggtaggtgtctttcatgcttaagttatgtgt |
447 |
Q |
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| T |
46315263 |
gctagcgttggtaggtgtttttcatgcttaaattatgtgt |
46315302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 258 - 389
Target Start/End: Complemental strand, 37163071 - 37162940
Alignment:
| Q |
258 |
tttgttatttacatcaaggagggtgtttataaagagtatgttgaagttactaaaaccatgactcacgttgttttcattggtgatggtggtagaaagacac |
357 |
Q |
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||||||||| | |||||||||||||||||| | |||||||||||||||||||| | |||||||| ||||| || | ||||||||||| | |||||| |
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| T |
37163071 |
tttgttattcatatcaaggagggtgtttatcatgagtatgttgaagttactaagaaaatgactcatgttgtgtttttgggtgatggtggcaacaagacaa |
37162972 |
T |
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| Q |
358 |
gcattacgggcaataaaaacttcattgatgga |
389 |
Q |
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| T |
37162971 |
gaattactggcaacaaaaattttatagatgga |
37162940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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