View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18747_low_21 (Length: 404)

Name: NF18747_low_21
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18747_low_21
NF18747_low_21
[»] chr8 (1 HSPs)
chr8 (28-401)||(31834442-31834824)
[»] chr3 (2 HSPs)
chr3 (167-227)||(45924679-45924739)
chr3 (173-262)||(31841993-31842083)
[»] chr2 (3 HSPs)
chr2 (166-208)||(45642009-45642051)
chr2 (166-208)||(4322597-4322639)
chr2 (174-258)||(32429724-32429808)
[»] chr7 (1 HSPs)
chr7 (167-209)||(26870051-26870093)
[»] chr5 (1 HSPs)
chr5 (166-258)||(32343730-32343822)
[»] chr1 (1 HSPs)
chr1 (166-210)||(43009284-43009328)


Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 28 - 401
Target Start/End: Complemental strand, 31834824 - 31834442
Alignment:
Q  28 accatcgaggccttcgactgaacgcatcagaa---------gaagaagaagagcgatgaaggatgaacaagaggttttttcttttctttcattacatttc 118  Q
    ||||||||||||||||||||||||| ||||||         ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31834824 accatcgaggccttcgactgaacgcgtcagaaaaagaagaagaagaagaagagcaatgaaggatgaacaagaggttttttcttttctttcattacatttc 31834725  T
Q  119 tgattcttcaaatccgcttcagattaatttatgagattacggtcttgaaatctcgatttgaatcgtaaagtcttacgattttgcgattatgcctgccctc 218  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  31834724 tgattcttcaaatccgcttcagattaatttattagattacggtcttgaaatctcgatttgaatcgtaaagtcttacgattatgcgattatgcttgccctc 31834625  T
Q  219 aacgattaagactacgcatataatcccatttttgtggaattgggagaactcctaatttatatcctaagatcttacgattttgcaactatacttgccctta 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31834624 aacgattaagactacgcatataatcccatttttgtggaattgggagaactcctaatttatatcctaagatcttacgattttgcaactatacttgccctta 31834525  T
Q  319 ctaattaagagtacacataattctgcctgagatttagggattatgcttgcatccatttcaaaaagcaatcttcttctcactcg 401  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31834524 gtaattaagagtacacataattctgcctgagatttagggattatgcttgcatccatttcaaaaagcaatcttcttctccctcg 31834442  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 45924739 - 45924679
Alignment:
Q  167 aatctcgatttgaatcgtaaagtcttacgattttgcgattatgcctgccctcaacgattaa 227  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  |||||| | |||||||    
T  45924739 aatctcgatttgaatcgtaaaatcttatgattttgcgattatgattgcccttagcgattaa 45924679  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 262
Target Start/End: Original strand, 31841993 - 31842083
Alignment:
Q  173 gatttgaatcgtaaagtcttacgattttgcgattatgcctgccctcaacgattaagactacgcatataatccca-tttttgtggaattggg 262  Q
    |||||||||| |||| ||||||||||||||||| |||  | |||| || ||||| || | | |||||||||| | ||||||||||||||||    
T  31841993 gatttgaatcataaaatcttacgattttgcgatcatgttttcccttaaagattaggagttcacatataatcctattttttgtggaattggg 31842083  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 45642051 - 45642009
Alignment:
Q  166 aaatctcgatttgaatcgtaaagtcttacgattttgcgattat 208  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  45642051 aaatctcgatttgaatcgtaaaatcttatgattttgcgattat 45642009  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 208
Target Start/End: Original strand, 4322597 - 4322639
Alignment:
Q  166 aaatctcgatttgaatcgtaaagtcttacgattttgcgattat 208  Q
    |||||||||||| |||| |||| ||||||||||||||||||||    
T  4322597 aaatctcgattttaatcttaaaatcttacgattttgcgattat 4322639  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 258
Target Start/End: Original strand, 32429724 - 32429808
Alignment:
Q  174 atttgaatcgtaaagtcttacgattttgcgattatgcctgccctcaacgattaagactacgcatataatcccatttttgtggaat 258  Q
    |||||||| ||||| ||  | |||||||||||||||| |||| ||||| ||||||| ||  || ||||||| ||||| |||||||    
T  32429724 atttgaattgtaaaatcccatgattttgcgattatgcttgccatcaaccattaagagtatacacataatcctattttggtggaat 32429808  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 26870093 - 26870051
Alignment:
Q  167 aatctcgatttgaatcgtaaagtcttacgattttgcgattatg 209  Q
    |||| |||||||||||||||| ||||| |||||||||||||||    
T  26870093 aatcccgatttgaatcgtaaaatcttatgattttgcgattatg 26870051  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 32343822 - 32343730
Alignment:
Q  166 aaatctcgatttgaatcgtaaagtcttacgattttgcgattatgcctgccctcaacgattaagactacgcatataatcccatttttgtggaat 258  Q
    ||||| || ||||||||||||| ||  ||||||||| |||||||| |||||||| | ||||||| ||  || ||||||| | ||| |||||||    
T  32343822 aaatcccgttttgaatcgtaaaatcccacgattttgtgattatgcttgccctcagcaattaagagtatacacataatcctagtttggtggaat 32343730  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 43009328 - 43009284
Alignment:
Q  166 aaatctcgatttgaatcgtaaagtcttacgattttgcgattatgc 210  Q
    ||||| |||||||||||||||| ||||| ||||||||| ||||||    
T  43009328 aaatcccgatttgaatcgtaaaatcttatgattttgcgtttatgc 43009284  T

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