View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18747_low_22 (Length: 400)
Name: NF18747_low_22
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18747_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 21 - 386
Target Start/End: Complemental strand, 279901 - 279536
Alignment:
| Q |
21 |
cattcatgtgactaatgcagagcactctaaccataatgatgatggtaatgttcacaaaaatgaggaacaaactacttcaattcctttggggaatgactca |
120 |
Q |
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| T |
279901 |
cattcatgtgactaatgcagagcactctaaccataatgatgatggtaatgttcacaaaaatgaggaacaaactacttcaattcctttggggaatgactca |
279802 |
T |
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| Q |
121 |
agtttcgttgcagacaatcctgaccctcacactaacaataacactgatacaaccacagaaaaggacacatctgcatctgagccacaaaatgatgatacca |
220 |
Q |
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| T |
279801 |
agtttcgttgcagacaatcctgaccctcacactaacaataacactgatacaaccacagaaaaggacacatctgcatctgagccacaaaatgatgatacca |
279702 |
T |
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| Q |
221 |
caagaatagatgcagaccatacaacactgaatccccctcaaaagttgctcagatggaggaaccaattcctgatagtcaacccaacaatgcaatggttgat |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
279701 |
caagaatagatgcagaccatacaacactgaatccccctcaaaagttgctcagatggaggaaccaattcctgatagtcaacccaacaatgcaatggttgat |
279602 |
T |
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| Q |
321 |
accaacaataaggatgatcaagctactagaagcgaagcagaacactcgacacaggaatctccttca |
386 |
Q |
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| T |
279601 |
accaacaataaggatgatcaagctactagaagcgaagcagaacactcgacacaggaatctccttca |
279536 |
T |
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