View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18747_low_23 (Length: 386)
Name: NF18747_low_23
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18747_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 14 - 367
Target Start/End: Original strand, 7422367 - 7422720
Alignment:
| Q |
14 |
catcaatatacccttcttcaacaatggcgaaactctcatgcattgctctaactatcttactctttaacaatctcatcctctctcaagctatctacggttc |
113 |
Q |
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| T |
7422367 |
catcaatatacccttcttcaacaatggcgaaactctcatgcattgctctaactatcttactctttaacaatctcatcctctctcaagctatctacggttc |
7422466 |
T |
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| Q |
114 |
ttcctcaaccgttcttcaactcactcctgacaacttcaactccaaggttctgaattcaaatgaagttgttcttgttgaattctttgctccacggtgtgga |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7422467 |
ttcctcaaccgttcttcaactcactcctgacaacttcaactccaaggttctgaattcaaatgaagttgttcttgttgaattctttgctccacggtgtgga |
7422566 |
T |
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| Q |
214 |
cactgtgaggttctgactcctatatgggagaaggcagctactgtattaaagggtgtagttactgtggcagcacttgatgctgatgctcacaagtctctgg |
313 |
Q |
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| T |
7422567 |
cactgtgaggttctgactcctatatgggagaaggcagctactgtattaaagggtgtagttactgtggcagcacttgatgctgatgctcacaagtctctgg |
7422666 |
T |
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| Q |
314 |
ctcaggaatatggtattagaggatttccaactataaaggcgttttcccccggaa |
367 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7422667 |
ctcatgaatatggtattagaggatttccaactataaaggcgttttcccccggaa |
7422720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 158 - 319
Target Start/End: Complemental strand, 36639275 - 36639114
Alignment:
| Q |
158 |
aggttctgaattcaaatgaagttgttcttgttgaattctttgctccacggtgtggacactgtgaggttctgactcctatatgggagaaggcagctactgt |
257 |
Q |
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| T |
36639275 |
aggttctgaattcaaatggagttgttcttgttgaattctttgctccatggtgcgggcactgtaaggctctgactccaatatgggagaaggcagctactgt |
36639176 |
T |
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| Q |
258 |
attaaagggtgtagttactgtggcagcacttgatgctgatgctcacaagtctctggctcagg |
319 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||| |
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| T |
36639175 |
gttaaagggtgtagttactgtagcagcacttgatgctgatgctcaccaatctctggctcagg |
36639114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 36640853 - 36640704
Alignment:
| Q |
13 |
tcatcaatatacccttcttcaacaatggcgaaactctcatgcattgctctaactatcttactctttaacaatctcatcctctctcaagctatctacggtt |
112 |
Q |
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|||||||| ||| ||||||||||||||| |||||||||| ||||||| |||||||||| ||||| |||||||||||||| ||||| ||| ||||||||| |
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| T |
36640853 |
tcatcaatctacgattcttcaacaatggcaaaactctcattcattgctgtaactatctttctcttcaacaatctcatcctttctcacgctctctacggtt |
36640754 |
T |
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| Q |
113 |
cttcctcaaccgttcttcaactcactcctgacaacttcaactccaaggtt |
162 |
Q |
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|||||||| | |||||||||||||||||| |||||||||| ||||||||| |
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| T |
36640753 |
cttcctcacctgttcttcaactcactcctaacaacttcaagtccaaggtt |
36640704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 315 - 359
Target Start/End: Complemental strand, 36638212 - 36638168
Alignment:
| Q |
315 |
tcaggaatatggtattagaggatttccaactataaaggcgttttc |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36638212 |
tcaggaatatggtattagaggatttccaactataaaggtgttttc |
36638168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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