View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18747_low_24 (Length: 382)

Name: NF18747_low_24
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18747_low_24
NF18747_low_24
[»] chr7 (1 HSPs)
chr7 (246-321)||(32920466-32920541)
[»] chr4 (2 HSPs)
chr4 (109-177)||(11819407-11819475)
chr4 (41-89)||(11819365-11819413)


Alignment Details
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 246 - 321
Target Start/End: Original strand, 32920466 - 32920541
Alignment:
Q  246 cgacgatcaatttcactatccactagaggggatcaattgaaacctaattaactctgttaatgaagatttgtcacca 321  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  32920466 cgacgatcaattccactatccactagaggggaccaattgaaacctaattaactctgttaatgaagatttgtcacca 32920541  T

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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 11819407 - 11819475
Alignment:
Q  109 gttaacatgtttttgttccaatgtgcgagacatattttttacgtagctcataaaacacattattaacga 177  Q
    ||||||||||||||||||||||  || ||||||||||||||||| ||||||||||||||||||||||||    
T  11819407 gttaacatgtttttgttccaataagctagacatattttttacgtggctcataaaacacattattaacga 11819475  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 11819365 - 11819413
Alignment:
Q  41 gttgtatctaatttctaaagctagggtgcaagtagtggttacgttaaca 89  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11819365 gttgtatctaatttctaaagctagggtgcaagtagtggttatgttaaca 11819413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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