View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18747_low_28 (Length: 339)
Name: NF18747_low_28
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18747_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 68 - 284
Target Start/End: Complemental strand, 48223847 - 48223632
Alignment:
| Q |
68 |
aaagccagtccaccagaaaaacaccccaaacacaactaccgaatgcaacattctctctggttccaaatccattcaaacagcagacacagatacttcttgt |
167 |
Q |
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| T |
48223847 |
aaagccagtccaccagaaaa-caccccaaacacaactacaaaatgcaacattctctcgggttccaaatccgttcaaacagcagacacaagtacttcttgt |
48223749 |
T |
|
| Q |
168 |
gaaccaaatggaacctccttagcatacctgaaacttgaaagacactatcaccgtaacaaatgtgaaacatttttcattaaaaatcataacaacaagcaaa |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
48223748 |
aaaccaaatggaacctccttagcatacctgaaacttgaaagacattatcaccaaaacaaatgtgaaacatttttcattaaaaaacagaacaacaagcaaa |
48223649 |
T |
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| Q |
268 |
agagaactccgtacaaa |
284 |
Q |
| |
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||||||| ||||||| |
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| T |
48223648 |
ggagaactatgtacaaa |
48223632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 165 - 277
Target Start/End: Original strand, 23657017 - 23657132
Alignment:
| Q |
165 |
tgtgaaccaaatggaacctccttagcat-acctgaaacttgaaagacactatcaccgtaacaaatgtgaaa--catttttcattaaaaatcataacaaca |
261 |
Q |
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|||||||||||| ||| ||||||||||| ||||||||||||||||||||||||| | |||||||||||||| | | ||||||||||| ||||||| || |
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| T |
23657017 |
tgtgaaccaaatagaatctccttagcatcacctgaaacttgaaagacactatcatcataacaaatgtgaaacccctcgttcattaaaaagcataacatca |
23657116 |
T |
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| Q |
262 |
agcaaaagagaactcc |
277 |
Q |
| |
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|| || ||| |||||| |
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| T |
23657117 |
aggaagagataactcc |
23657132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 157 - 284
Target Start/End: Complemental strand, 5525996 - 5525869
Alignment:
| Q |
157 |
atacttcttgtgaaccaaatggaacctccttagcatacctgaaacttgaaagacactatcaccgtaacaaatgtgaaacatttttcattaaaaatcataa |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||| ||||| |
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| T |
5525996 |
atacttcttgtgaaccaaatggaacctccttagcatacctgaaacttgaaagactctatcaccataacaaatgtgaaacattgttcattaaaaagcataa |
5525897 |
T |
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| Q |
257 |
caacaagcaaaagagaactccgtacaaa |
284 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
5525896 |
caacaagcaaaagagaactccgtacaaa |
5525869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 320
Target Start/End: Original strand, 43262165 - 43262203
Alignment:
| Q |
282 |
aaaggttaacctagtcactaataataaagtcttgtaacc |
320 |
Q |
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|||| ||||||||||| |||||||||||||||||||||| |
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| T |
43262165 |
aaagattaacctagtctctaataataaagtcttgtaacc |
43262203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 319
Target Start/End: Complemental strand, 36229243 - 36229206
Alignment:
| Q |
282 |
aaaggttaacctagtcactaataataaagtcttgtaac |
319 |
Q |
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|||||||||||||||| |||||||||||||| |||||| |
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|
| T |
36229243 |
aaaggttaacctagtctctaataataaagtcatgtaac |
36229206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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