View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18747_low_29 (Length: 326)

Name: NF18747_low_29
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18747_low_29
NF18747_low_29
[»] chr1 (4 HSPs)
chr1 (93-311)||(46094292-46094510)
chr1 (1-161)||(8968612-8968771)
chr1 (2-148)||(35318442-35318589)
chr1 (28-62)||(31416847-31416881)
[»] chr5 (4 HSPs)
chr5 (1-148)||(9613429-9613577)
chr5 (2-137)||(14554582-14554718)
chr5 (2-148)||(33308842-33308989)
chr5 (93-163)||(22790139-22790209)
[»] chr7 (3 HSPs)
chr7 (1-148)||(3966224-3966372)
chr7 (89-148)||(3209043-3209102)
chr7 (25-62)||(5907967-5908004)
[»] chr6 (1 HSPs)
chr6 (4-163)||(32953483-32953643)
[»] chr8 (1 HSPs)
chr8 (1-148)||(19916380-19916528)
[»] chr4 (2 HSPs)
chr4 (6-148)||(2539622-2539765)
chr4 (105-166)||(27015162-27015223)
[»] chr3 (3 HSPs)
chr3 (25-163)||(16939778-16939917)
chr3 (105-165)||(12530254-12530314)
chr3 (25-148)||(25732919-25733043)
[»] chr2 (2 HSPs)
chr2 (108-165)||(5605131-5605188)
chr2 (30-157)||(19067193-19067320)
[»] scaffold0381 (1 HSPs)
scaffold0381 (105-166)||(4560-4621)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 93 - 311
Target Start/End: Original strand, 46094292 - 46094510
Alignment:
Q  93 actaggtactttaaattaggaactgtgctcgggctacctaaaccccgacaattccaactaatgacactcatctaacaacccaaccttaatcccggccaaa 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46094292 actaggtactttaaattaggaactgtgctcgggctacctaaaccccgacaattccaactaatgacactcatctaacaacccaaccttaatcccggccaaa 46094391  T
Q  193 actataaggattttagaatagtgagaacggcacaacggctgcaacagtgaatgaaaccatggaatcaagaaacccttggaacatatcataaaagacaaaa 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  46094392 actataaggattttagaatagtgagaacggcacaacggctgcaacagtgaatgaaaccatggaatcaagaaacccttggagcatatcataaaagacaaaa 46094491  T
Q  293 gtgtgaatttggatatatg 311  Q
    |||||||||||||||||||    
T  46094492 gtgtgaatttggatatatg 46094510  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 8968612 - 8968771
Alignment:
Q  1 taatcaaaagccaacatatagttcaattcttcaattttattagacgttgtcattgtttcaga-aggattattgcatccggtttataggtccggactaggt 99  Q
    |||||||||| ||| ||||| ||||| |||||||||||  |||   |||||||||||| ||| | ||||||| ||| | ||||||| |  ||||||||||    
T  8968612 taatcaaaagacaaaatatacttcaactcttcaatttt--tagtttttgtcattgtttgagacatgattattccatacagtttatatgatcggactaggt 8968709  T
Q  100 actttaaattaggaactgtgctcgggctacctaaaccccgacaattccaactaatgacactc 161  Q
    | || | ||||||||||||||||||||||||| | | |||||| ||||||||||||||||||    
T  8968710 atttaagattaggaactgtgctcgggctacctgatctccgacatttccaactaatgacactc 8968771  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 148
Target Start/End: Complemental strand, 35318589 - 35318442
Alignment:
Q  2 aatcaaaagccaacatatagttcaattcttcaattttatt-agacgttgtcattgtttcaga-aggattattgcatccggtttataggtccggactaggt 99  Q
    ||||||||| ||| ||||| ||||| |||||||||||||| ||| | ||||||||||||||| || |  ||  | |||||||| ||||||||||| ||||    
T  35318589 aatcaaaagacaaaatatacttcaaatcttcaattttatttaga-gctgtcattgtttcagacagaaaaatcccttccggtttgtaggtccggacaaggt 35318491  T
Q  100 actttaaattaggaactgtgctcgggctacctaaaccccgacaattcca 148  Q
    |||| |  || |||||||| ||||||||||| | ||||||||| |||||    
T  35318490 acttgaggttgggaactgtactcgggctaccaagaccccgacagttcca 35318442  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 31416881 - 31416847
Alignment:
Q  28 tcttcaattttattagacgttgtcattgtttcaga 62  Q
    ||||||||||||||||||||||||||| |||||||    
T  31416881 tcttcaattttattagacgttgtcattatttcaga 31416847  T

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Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 9613429 - 9613577
Alignment:
Q  1 taatcaaaagccaacatatagttcaattcttcaattttattagacgttgtcattgtttcaga-aggattattgcatccggtttataggtccggactaggt 99  Q
    ||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9613429 taatcgaaagccaacatatatttcaattcttcaattttattagatgttgtcattgtttcagacaggattattgcatccggtttataggtccggactaggt 9613528  T
Q  100 actttaaattaggaactgtgctcgggctacctaaaccccgacaattcca 148  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9613529 actttaaattaggaactgtgctcgggctacctaaaccccgacagttcca 9613577  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 2 - 137
Target Start/End: Complemental strand, 14554718 - 14554582
Alignment:
Q  2 aatcaaaagccaacatatagttcaattcttcaattttattagacgttgtcattgtttcaga-aggattattgcatccggtttataggtccggactaggta 100  Q
    ||||||||||||||||||| || || ||||||||||||||||||||| ||||||||| | | | ||||||| |||| | ||||||||||   ||||| ||    
T  14554718 aatcaaaagccaacatatattttaaatcttcaattttattagacgttatcattgttttacacacgattattacatctgatttataggtctaaactagata 14554619  T
Q  101 ctttaaattaggaactgtgctcgggctacctaaaccc 137  Q
    ||||||||| ||||  |||||||| ||||||||||||    
T  14554618 ctttaaattgggaatcgtgctcggactacctaaaccc 14554582  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 148
Target Start/End: Original strand, 33308842 - 33308989
Alignment:
Q  2 aatcaaaagccaacatatagttcaattcttcaattttatt-agacgttgtcattgtttcaga-aggattattgcatccggtttataggtccggactaggt 99  Q
    ||||||||| ||| ||||| ||||| |||| ||||||||| ||| | ||||||||||||||| || |  ||  | |||||||| ||||||||||| ||||    
T  33308842 aatcaaaagacaaaatatacttcaaatctttaattttatttaga-gctgtcattgtttcagacagaaaaatcccttccggtttgtaggtccggacaaggt 33308940  T
Q  100 actttaaattaggaactgtgctcgggctacctaaaccccgacaattcca 148  Q
    |||| |  || |||||||| ||||||||||| | ||||||||| |||||    
T  33308941 acttgaggttgggaactgtactcgggctaccaagaccccgacagttcca 33308989  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 163
Target Start/End: Original strand, 22790139 - 22790209
Alignment:
Q  93 actaggtactttaaattaggaactgtgctcgggctacctaaaccccgacaattccaactaatgacactcat 163  Q
    |||||||||||||||| || || ||  |||||||||||||||||||  ||||||||||  || ||||||||    
T  22790139 actaggtactttaaatcagaaattgcactcgggctacctaaacccctgcaattccaaccgataacactcat 22790209  T

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Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 3966224 - 3966372
Alignment:
Q  1 taatcaaaagccaacatatagttcaattcttcaattttattagacgttgtcattgtttcaga-aggattattgcatccggtttataggtccggactaggt 99  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||| ||||||||    
T  3966224 taatcgaaagccaacatatatttcaattcttcaattttattagacgttgtcattgtttcatacatgattattgcatccggtttataggtcctgactaggt 3966323  T
Q  100 actttaaattaggaactgtgctcgggctacctaaaccccgacaattcca 148  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3966324 actttaaattaggaactgtgctcgggctacctaaaccccgacagttcca 3966372  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 148
Target Start/End: Original strand, 3209043 - 3209102
Alignment:
Q  89 ccggactaggtactttaaattaggaactgtgctcgggctacctaaaccccgacaattcca 148  Q
    ||||||||||||||| | || ||||| ||||||||||||||||| |||||||||||||||    
T  3209043 ccggactaggtacttaagatcaggaattgtgctcgggctacctataccccgacaattcca 3209102  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 5907967 - 5908004
Alignment:
Q  25 aattcttcaattttattagacgttgtcattgtttcaga 62  Q
    |||||| |||||||||||||||||||||||||||||||    
T  5907967 aattctccaattttattagacgttgtcattgtttcaga 5908004  T

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Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 4 - 163
Target Start/End: Complemental strand, 32953643 - 32953483
Alignment:
Q  4 tcaaaagccaacatatagttcaattcttcaattttattagacgttgtcattgtttcaga-aggattattgcatccggtttataggtccggactaggtact 102  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||| | |||| |||    
T  32953643 tcaaaagccaacatatatttcaaatcttcaattttattagacgttgtcattgtttcagataggattattgcatccggcttaaaggtccgaattaggaact 32953544  T
Q  103 ttaaattaggaactgtgctcgggctacctaaaccccgacaattccaactaatgacactcat 163  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32953543 ttaaattaggaattgtgctcgggctacctaaacctcgacaattccaactaatgacactcat 32953483  T

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Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 19916380 - 19916528
Alignment:
Q  1 taatcaaaagccaacatatagttcaattcttcaattttattagacgttgtcattgtttcaga-aggattattgcatccggtttataggtccggactaggt 99  Q
    |||| ||||| ||||||||| ||||||||||||||||||||||||| |||| |||||| ||| | ||||||||||||||||||||||||| ||| |||||    
T  19916380 taataaaaagtcaacatatatttcaattcttcaattttattagacgctgtcgttgttttagacaagattattgcatccggtttataggtctggattaggt 19916479  T
Q  100 actttaaattaggaactgtgctcgggctacctaaaccccgacaattcca 148  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  19916480 actttaaattaggaactgtgctcgggcaacctaaaccccgacagttcca 19916528  T

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Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 6 - 148
Target Start/End: Complemental strand, 2539765 - 2539622
Alignment:
Q  6 aaaagccaacatatagttcaattcttcaattttattagacgttgtcattgtttcagaagga-ttattgcatccggtttataggtccggactaggtacttt 104  Q
    ||||||||||||||| || |||||||||||||||||||||||||| ||||||||||  ||| |||||||||||| |||||||||||||||||||||||||    
T  2539765 aaaagccaacatatatttaaattcttcaattttattagacgttgttattgtttcaggcggaattattgcatccgatttataggtccggactaggtacttt 2539666  T
Q  105 aaattaggaactgtgctcgggctacctaaaccccgacaattcca 148  Q
    | ||| | || ||||||||||||||||||||||||||| |||||    
T  2539665 acattggaaattgtgctcgggctacctaaaccccgacagttcca 2539622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 166
Target Start/End: Original strand, 27015162 - 27015223
Alignment:
Q  105 aaattaggaactgtgctcgggctacctaaaccccgacaattccaactaatgacactcatcta 166  Q
    |||| |||||||| ||||||||| ||||| ||||| || ||||||||||| |||||||||||    
T  27015162 aaatcaggaactgcgctcgggctgcctaatccccggcagttccaactaataacactcatcta 27015223  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 163
Target Start/End: Original strand, 16939778 - 16939917
Alignment:
Q  25 aattcttcaattttattagacgttgtcattgtttcaga-aggattattgcatccggtttataggtccggactaggtactttaaattaggaactgtgctcg 123  Q
    |||||||||||||||||  | | || |||||||||||| || |  |||||||| |||||||| |||||||| ||||| || | |||||||||||| ||||    
T  16939778 aattcttcaattttatttaaagctgccattgtttcagacagaaaaattgcatctggtttataagtccggacgaggtatttgagattaggaactgtactcg 16939877  T
Q  124 ggctacctaaaccccgacaattccaactaatgacactcat 163  Q
    ||||||||||||||| ||| |||||||| |||| ||||||    
T  16939878 ggctacctaaacccctacagttccaactgatgaaactcat 16939917  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 12530254 - 12530314
Alignment:
Q  105 aaattaggaactgtgctcgggctacctaaaccccgacaattccaactaatgacactcatct 165  Q
    |||| |||||||| ||||||||| ||||| ||||| || ||||||||||| ||||||||||    
T  12530254 aaatcaggaactgcgctcgggcttcctaatccccggcagttccaactaataacactcatct 12530314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 25733043 - 25732919
Alignment:
Q  25 aattcttcaattttattagacgttgtcattgtttcaga-aggattattgcatccggtttataggtccggactaggtactttaaattaggaactgtgctcg 123  Q
    |||||||||||||||||  | | || |||||||||||| || |  ||| | ||| ||||||| |||| ||| |||||||| | | | |||||| ||||||    
T  25733043 aattcttcaattttatttaaggctgccattgtttcagacagaaaaattccttccagtttatatgtccagacaaggtacttaagagtcggaactatgctcg 25732944  T
Q  124 ggctacctaaaccccgacaattcca 148  Q
    |||| |||| ||||||||| |||||    
T  25732943 ggcttcctagaccccgacagttcca 25732919  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 5605131 - 5605188
Alignment:
Q  108 ttaggaactgtgctcgggctacctaaaccccgacaattccaactaatgacactcatct 165  Q
    ||||||||||  |||||||| |||||||||||||| ||| ||||||||||||||||||    
T  5605131 ttaggaactgcactcgggctccctaaaccccgacagttcaaactaatgacactcatct 5605188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 157
Target Start/End: Complemental strand, 19067320 - 19067193
Alignment:
Q  30 ttcaattttattagacgttgtcattgtttcaga-aggattattgcatccggtttataggtccggactaggtactttaaattaggaactgtgctcgggcta 128  Q
    |||||||||||| | |||||||||| ||||||| ||||||||| | || |||||||| |  ||||||||||| || | |||||||||  ||||||| ||     
T  19067320 ttcaattttatttgccgttgtcattttttcagacaggattattccttctggtttatatgatcggactaggtatttaagattaggaacaatgctcggactg 19067221  T
Q  129 cctaaaccccgacaattccaactaatgac 157  Q
    |||||| ||  |||||||||||| |||||    
T  19067220 cctaaa-ccgaacaattccaacttatgac 19067193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 4621 - 4560
Alignment:
Q  105 aaattaggaactgtgctcgggctacctaaaccccgacaattccaactaatgacactcatcta 166  Q
    |||| |||||||| ||||||||| ||||| ||||| || ||||||||||| |||||||||||    
T  4621 aaatcaggaactgcgctcgggctgcctaatccccggcagttccaactaataacactcatcta 4560  T

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