View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18747_low_3 (Length: 713)

Name: NF18747_low_3
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18747_low_3
NF18747_low_3
[»] chr8 (7 HSPs)
chr8 (298-548)||(40481956-40482206)
chr8 (595-691)||(40481813-40481909)
chr8 (110-250)||(40482254-40482395)
chr8 (110-172)||(3650514-3650576)
chr8 (115-161)||(24202156-24202202)
chr8 (110-168)||(10982724-10982782)
chr8 (131-172)||(42541873-42541914)
[»] chr3 (3 HSPs)
chr3 (110-174)||(33634490-33634554)
chr3 (131-175)||(28808173-28808217)
chr3 (119-168)||(45309157-45309206)
[»] chr2 (2 HSPs)
chr2 (615-695)||(10003264-10003344)
chr2 (118-173)||(38334637-38334692)
[»] chr4 (4 HSPs)
chr4 (110-173)||(50668333-50668396)
chr4 (123-174)||(19283960-19284011)
chr4 (131-173)||(37970200-37970242)
chr4 (112-166)||(47704582-47704636)
[»] scaffold0086 (1 HSPs)
scaffold0086 (132-173)||(19082-19123)
[»] chr7 (3 HSPs)
chr7 (110-167)||(25251509-25251566)
chr7 (110-168)||(23177940-23177998)
chr7 (624-685)||(27922395-27922456)
[»] chr1 (4 HSPs)
chr1 (110-173)||(1091172-1091235)
chr1 (110-172)||(24978238-24978300)
chr1 (131-173)||(37573313-37573355)
chr1 (131-168)||(28213911-28213948)
[»] chr5 (1 HSPs)
chr5 (110-168)||(33369418-33369476)


Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-129; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 298 - 548
Target Start/End: Complemental strand, 40482206 - 40481956
Alignment:
Q  298 ccctatctttcctaaagccaacaccaacactaagtgctaaaagtattactatacccgaactgaaataagtcaagccaaaattattgaagccaaggaaata 397  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40482206 ccctatctttcctaaagccaacaccaacactaagtgctacaagtattactatacccgaactgaaataagtcaagccaaaattattgaagccaaggaaata 40482107  T
Q  398 ttttaaatgccatgccactggtggcgaaaaattcaaatgactagagatgacaaacggtaagatacgactatggagctatattacttgtctcagcggttag 497  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  40482106 ttttaaatgccatgccactggtggcgaaaaattcaaatgactagagatgacaaacggtaagatatgactatggagctatattacttgtctcagcggtcag 40482007  T
Q  498 aatatatcagggtcgtatatgaggcataaggtgaccaaccgtcctaaacct 548  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  40482006 aatatatcagggtcgtatatgaggcataaggtgatcaaccgtcctaaacct 40481956  T

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Target: chr8; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 595 - 691
Target Start/End: Complemental strand, 40481909 - 40481813
Alignment:
Q  595 tgaaggcacgttatactttgaaaatatacaaatgaagattttgaatctagcatgaatattgtcaaaagccttgcatttgacatgaatatagagccga 691  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40481909 tgaaggcacgttatactttgaaaatatacaaatgaagattttgaatctagcatgaatattgtcaaaagccttgcatttgacatgaatatagagccga 40481813  T

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Target: chr8; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 110 - 250
Target Start/End: Complemental strand, 40482395 - 40482254
Alignment:
Q  110 tgaaccccgaaccttatatacattatatattatttataccaactgaattaagctcacgatgacaatattatgtctttgtttctcgatagaaaaatgtttt 209  Q
    ||||||||| |||||  |||||||||||||||| |||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||| |||||    
T  40482395 tgaaccccggaccttgcatacattatatattatctataccaactaaattaagctcacgaggacaatgttatgtctttgtttctcgatagaaaaaagtttt 40482296  T
Q  210 tcaaac-nnnnnnnntagctagacaacggtataaaaatacgg 250  Q
    ||||||         |||||||||||||||||||||||||||    
T  40482295 tcaaacaaaaaaaaatagctagacaacggtataaaaatacgg 40482254  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 3650576 - 3650514
Alignment:
Q  110 tgaaccccgaaccttatatacattatatattatttataccaactgaattaagctcacgatgac 172  Q
    |||||||||||||||| ||| |||||  ||| ||| |||||||||| ||||||||||||||||    
T  3650576 tgaaccccgaaccttacatatattatgcattttttctaccaactgagttaagctcacgatgac 3650514  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 24202202 - 24202156
Alignment:
Q  115 cccgaaccttatatacattatatattatttataccaactgaattaag 161  Q
    ||||||||||||||| ||||| |||| ||||||||||||||||||||    
T  24202202 cccgaaccttatatatattatgtattgtttataccaactgaattaag 24202156  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 10982782 - 10982724
Alignment:
Q  110 tgaaccccgaaccttatatacattatatattatttataccaactgaattaagctcacga 168  Q
    |||||||||||||||  ||| |||||||||| |  ||||||||||| ||||||||||||    
T  10982782 tgaaccccgaaccttgcatatattatatattgtccataccaactgagttaagctcacga 10982724  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 42541873 - 42541914
Alignment:
Q  131 attatatattatttataccaactgaattaagctcacgatgac 172  Q
    |||||||||| ||| ||| |||||||||||||||||||||||    
T  42541873 attatatattgtttctactaactgaattaagctcacgatgac 42541914  T

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Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 33634554 - 33634490
Alignment:
Q  110 tgaaccccgaaccttatatacattatatattatttataccaactgaattaagctcacgatgacaa 174  Q
    |||||||||||||||| ||| ||||||||||||||||||||||| | |||| |||||||||||||    
T  33634554 tgaaccccgaaccttacatatattatatattatttataccaactaagttaaactcacgatgacaa 33634490  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 28808173 - 28808217
Alignment:
Q  131 attatatattatttataccaactgaattaagctcacgatgacaat 175  Q
    ||||| |||||| ||||||||||||||||||||||||| ||||||    
T  28808173 attatgtattatctataccaactgaattaagctcacgaggacaat 28808217  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 45309157 - 45309206
Alignment:
Q  119 aaccttatatacattatatattatttataccaactgaattaagctcacga 168  Q
    |||||| |||| |||||| ||| |||||||||||||| ||||||||||||    
T  45309157 aaccttgtatatattataaattgtttataccaactgagttaagctcacga 45309206  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 615 - 695
Target Start/End: Original strand, 10003264 - 10003344
Alignment:
Q  615 aaaatatacaaatgaagattttgaatctagcatgaatattgtcaaaagccttgcatttgacatgaatatagagccgatact 695  Q
    |||||||| ||||||||  ||| ||||||| |||||||||| ||||||||||||||||||  ||  |||||||| ||||||    
T  10003264 aaaatataaaaatgaaggctttaaatctagtatgaatattggcaaaagccttgcatttgatgtgtgtatagagctgatact 10003344  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 38334692 - 38334637
Alignment:
Q  118 gaaccttatatacattatatattatttataccaactgaattaagctcacgatgaca 173  Q
    |||||||| ||| ||||||||||||| ||||||| |||||||| ||||||| ||||    
T  38334692 gaaccttacatatattatatattattcataccaattgaattaatctcacgaggaca 38334637  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 50668396 - 50668333
Alignment:
Q  110 tgaaccccgaaccttatatacattatatattatttataccaactgaattaagctcacgatgaca 173  Q
    |||||||||||||||| ||| ||||| |||| || ||||||||||||||||| |||||| ||||    
T  50668396 tgaaccccgaaccttacatatattatgtattgttcataccaactgaattaagttcacgaagaca 50668333  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 19283960 - 19284011
Alignment:
Q  123 ttatatacattatatattatttataccaactgaattaagctcacgatgacaa 174  Q
    |||||||  |||| |||| ||||||||||||||||||||||||||| |||||    
T  19283960 ttatatattttatgtattgtttataccaactgaattaagctcacgaggacaa 19284011  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 37970200 - 37970242
Alignment:
Q  131 attatatattatttataccaactgaattaagctcacgatgaca 173  Q
    |||||| ||| |||||||||||||||||||| |||||||||||    
T  37970200 attatacattttttataccaactgaattaagttcacgatgaca 37970242  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 47704636 - 47704582
Alignment:
Q  112 aaccccgaaccttatatacattatatattatttataccaactgaattaagctcac 166  Q
    |||| ||||||||| ||| |||||| |||||| ||||||||||| ||||||||||    
T  47704636 aacctcgaaccttacatatattatacattattcataccaactgagttaagctcac 47704582  T

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Target: scaffold0086 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 19082 - 19123
Alignment:
Q  132 ttatatattatttataccaactgaattaagctcacgatgaca 173  Q
    ||||||||| |||||||||||||| |||||||||||||||||    
T  19082 ttatatattgtttataccaactgagttaagctcacgatgaca 19123  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 25251566 - 25251509
Alignment:
Q  110 tgaaccccgaaccttatatacattatatattatttataccaactgaattaagctcacg 167  Q
    |||||||| ||||||||||| |||||  ||| |||||||||||||| |||||||||||    
T  25251566 tgaaccccaaaccttatatatattatgcattgtttataccaactgagttaagctcacg 25251509  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 23177998 - 23177940
Alignment:
Q  110 tgaaccccgaaccttatatacattatatattatttataccaactgaattaagctcacga 168  Q
    |||||| | |||||| |||| |||||| |||||||||| |||| |||||||||||||||    
T  23177998 tgaaccactaaccttgtatatattatacattatttatatcaaccgaattaagctcacga 23177940  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 624 - 685
Target Start/End: Original strand, 27922395 - 27922456
Alignment:
Q  624 aaatgaagattttgaatctagcatgaatattgtcaaaagccttgcatttgacatgaatatag 685  Q
    ||||||||| ||||||||||| || ||||||| |||||| |||| |||||| |||| |||||    
T  27922395 aaatgaagactttgaatctagtataaatattgccaaaagtcttgaatttgatatgagtatag 27922456  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 1091235 - 1091172
Alignment:
Q  110 tgaaccccgaaccttatatacattatatattatttataccaactgaattaagctcacgatgaca 173  Q
    |||||||||||||||  |||||||||  ||| | |||||||||||| |||||||||||| ||||    
T  1091235 tgaaccccgaaccttgcatacattatgcattgtctataccaactgagttaagctcacgaggaca 1091172  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 24978300 - 24978238
Alignment:
Q  110 tgaaccccgaaccttatatacattatatattatttataccaactgaattaagctcacgatgac 172  Q
    |||||||  ||||||  ||| ||||| |||||| |||||||||||| ||||||||||||||||    
T  24978300 tgaaccctaaaccttgcatatattatgtattatctataccaactgagttaagctcacgatgac 24978238  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 131 - 173
Target Start/End: Complemental strand, 37573355 - 37573313
Alignment:
Q  131 attatatattatttataccaactgaattaagctcacgatgaca 173  Q
    |||||| |||||||||||||||||| |||||||||||| ||||    
T  37573355 attatacattatttataccaactgagttaagctcacgaggaca 37573313  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 168
Target Start/End: Complemental strand, 28213948 - 28213911
Alignment:
Q  131 attatatattatttataccaactgaattaagctcacga 168  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  28213948 attatatattatgtatatcaactgaattaagctcacga 28213911  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 33369418 - 33369476
Alignment:
Q  110 tgaaccccgaaccttatatacattatatattatttataccaactgaattaagctcacga 168  Q
    |||||||||||| ||  ||||||||| |||| || ||||||||||| ||||||||||||    
T  33369418 tgaaccccgaacgttgcatacattatgtattgttcataccaactgagttaagctcacga 33369476  T

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