View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18747_low_34 (Length: 306)
Name: NF18747_low_34
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18747_low_34 |
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| [»] scaffold0674 (1 HSPs) |
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| [»] scaffold0549 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 22 - 291
Target Start/End: Complemental strand, 9076738 - 9076467
Alignment:
| Q |
22 |
tactacaagaaaaatgtgttttagcgtcagcagaaacaggatgctatgaggcnnnnnnntggacacaa--cttttagcatcaacatagcatccaaaaaag |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||| |
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| T |
9076738 |
tactacaagaaaaatgtgttttagcgtcagcagaaacaggatgctatgaggcaaaaaa-tggatacaaaacttttagcatcaacatagcatccaaaaaag |
9076640 |
T |
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| Q |
120 |
tgacgacaataaaggctttgatgctaaacactagcatccaaaatgatccttgaaattgtaaggttgtattaacttagtctctcacattatcaatatttca |
219 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9076639 |
tgacgacaataaaggcgttgatgctaaacactagcatccaaaatgatccttgaaattgtaaggttgtattaacttagtctctcacattatcaatatttca |
9076540 |
T |
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| Q |
220 |
aaatgatccattaattgcaaaat-tttattaagttcgtccttctgtttggattagttaataaaatgcatatat |
291 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9076539 |
aaatgatccattaattgcaaaatgttaattaagttcgtccttctgtttggattagttaataaaatgcatatat |
9076467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 21496672 - 21496614
Alignment:
| Q |
170 |
tgaaattgtaaggttgtattaacttagtctctcacattatcaatatttcaaaatgatcc |
228 |
Q |
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|||||||||| | |||||| ||| ||||| ||| |||||||||||||||||||||||| |
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| T |
21496672 |
tgaaattgtaggattgtatcaacctagtcactcgtattatcaatatttcaaaatgatcc |
21496614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 26270987 - 26270929
Alignment:
| Q |
169 |
ttgaaattgtaaggttgtattaacttagtctctcacattatcaatatttcaaaatgatc |
227 |
Q |
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| T |
26270987 |
ttgaaattgtatgattgtatcaatctaatctctcacattatcaatattccaaaatgatc |
26270929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 7424207 - 7424272
Alignment:
| Q |
163 |
tgatccttgaaattgtaaggttgtattaacttagtctctcacattatcaatatttcaaaatgatcc |
228 |
Q |
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|||||| | |||||||| | ||||| ||| |||||||| |||||| ||||||||||||||||||| |
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| T |
7424207 |
tgatccctaaaattgtaggactgtatcaacctagtctctgacattaacaatatttcaaaatgatcc |
7424272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 17032729 - 17032660
Alignment:
| Q |
90 |
cttttagcatcaacatagcatccaaaaaagtgacgacaataaaggctttgatgctaaacactagcatccaa |
160 |
Q |
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| T |
17032729 |
cttttagcatcagaatagcatccacaaaagtgacgacagtaaa-gccttgatgctaaacactagcatccaa |
17032660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 17563165 - 17563096
Alignment:
| Q |
90 |
cttttagcatcaacatagcatccaaaaaagtgacgacaataaaggctttgatgctaaacactagcatccaa |
160 |
Q |
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|||||||||||| |||||||||| ||||||||||||| |||| || |||||||||||||||||||||||| |
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| T |
17563165 |
cttttagcatcagaatagcatccacaaaagtgacgacagtaaa-gccttgatgctaaacactagcatccaa |
17563096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0674 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0674
Description:
Target: scaffold0674; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 160
Target Start/End: Original strand, 7129 - 7200
Alignment:
| Q |
89 |
acttttagcatcaacatagcatccaaaaaagtgacgacaataaaggctttgatgctaaacactagcatccaa |
160 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||||| || |||| | || ||||||| |||||| |
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| T |
7129 |
acttttagcatcagcatagcattcaaaaaagtgacgacaataaaagccttgaagttatacactagaatccaa |
7200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0549 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0549
Description:
Target: scaffold0549; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 160
Target Start/End: Complemental strand, 8242 - 8171
Alignment:
| Q |
89 |
acttttagcatcaacatagcatccaaaaaagtgacgacaataaaggctttgatgctaaacactagcatccaa |
160 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||||| || |||| | || ||||||| |||||| |
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| T |
8242 |
acttttagcatcagcatagcattcaaaaaagtgacgacaataaaagccttgaagttatacactagaatccaa |
8171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 34476779 - 34476853
Alignment:
| Q |
86 |
acaacttttagcatcaacatagcatccaaaaaagtgacgacaataaaggctttgatgctaaacactagcatccaa |
160 |
Q |
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|||| ||||||||||| |||||||| ||||||||||||||||||||| || |||| | || ||||||| |||||| |
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| T |
34476779 |
acaatttttagcatcagcatagcattcaaaaaagtgacgacaataaaagccttgaagttatacactagaatccaa |
34476853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 1110088 - 1110018
Alignment:
| Q |
90 |
cttttagcatcaacatagcatccaaaaaagtgacgacaataaaggctttgatgctaaacactagcatccaa |
160 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||| || |||| || |||| ||||||||||| ||||||| |
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| T |
1110088 |
cttttagcatcagaatagcatccacaaaagtgacagcagtaaaagccttgaagctaaacactaacatccaa |
1110018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 42281928 - 42281997
Alignment:
| Q |
157 |
ccaaaatgatccttgaaattgtaaggttgtattaacttagtctctcacattatcaatatttcaaaatgat |
226 |
Q |
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| T |
42281928 |
ccaaattggtccttgaaattgtataattgtgtcaatctagtctctcacattatcaatatttcaaaatgat |
42281997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 2373782 - 2373846
Alignment:
| Q |
163 |
tgatccttgaaattgtaaggttgtattaacttag-tctctcacattatcaatatttcaaaatgatc |
227 |
Q |
| |
|
||||||||||||||||||| |||||| || |||| |||| ||||||||||||||| |||||||||| |
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| T |
2373782 |
tgatccttgaaattgtaagattgtatcaatttagttctc-cacattatcaatattccaaaatgatc |
2373846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 32423447 - 32423406
Alignment:
| Q |
186 |
tattaacttagtctctcacattatcaatatttcaaaatgatc |
227 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
32423447 |
tattagcttagtctctcacattatcaataattcaaaatgatc |
32423406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 9834809 - 9834750
Alignment:
| Q |
165 |
atccttgaaattgtaaggttgtattaacttagtctctcacattatcaatatttcaaaatg |
224 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | ||| ||||| ||| |||||||||||| |
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|
| T |
9834809 |
atccttgaaattgttgggttgtattaacttaatatcttacattttcattatttcaaaatg |
9834750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 154
Target Start/End: Complemental strand, 24470344 - 24470281
Alignment:
| Q |
91 |
ttttagcatcaacatagcatccaaaaaagtgacgacaataaaggctttgatgctaaacactagc |
154 |
Q |
| |
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||||||| |||||||||||||| |||||||||| |||||||| || |||| | |||||||||| |
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|
| T |
24470344 |
ttttagcgtcaacatagcatccgaaaaagtgacaacaataaatgccttgaagtcaaacactagc |
24470281 |
T |
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