View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18747_low_35 (Length: 297)
Name: NF18747_low_35
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18747_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 277
Target Start/End: Original strand, 52836520 - 52836771
Alignment:
| Q |
19 |
agtaggtacatgtttcctctttaaaaatttggtcattcaccttcagcaaagagggtggattctctaatggttatatattgcttgacctaataataggaat |
118 |
Q |
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| T |
52836520 |
agtaggtacatgtttcctctttaaaaatttggtcattcaccttcagcaaagagggtggattctctaatggttatatattgcttgacctaata-------t |
52836612 |
T |
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| Q |
119 |
aggagattcattttcctttgccatatgttgtgtttgatgttcatgtcaatgtatttttgttgtccaacttgcaacaaattgctgaatatcccgaatatat |
218 |
Q |
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| T |
52836613 |
aggagattcattttcctttgccatatgttgtgtttgatgttcatgtcaatgtatttttgttgtccaacttgcaacaaattgctgaatatcccgaatatat |
52836712 |
T |
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| Q |
219 |
tgggcttacgcatttaactgattaatctcttcnnnnnnnnccctagatgaaggctgatg |
277 |
Q |
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| T |
52836713 |
tgggcttacgcatttaactgattaatctcttcttttttttccctagatgaaggctgatg |
52836771 |
T |
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