View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18747_low_42 (Length: 274)
Name: NF18747_low_42
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18747_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 31717762 - 31717516
Alignment:
| Q |
13 |
aatataaatctgtcacgcagttttatataatataatcaaactataagataaatgtacatgatcagccaaacgaatttagaaaatgatggacaagaattat |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31717762 |
aatacaaatctgtcacgcagttttatataatataatcaaactataagataaatgtacatgatcagccaaacgaatttagaaaatgatggacaagaattat |
31717663 |
T |
|
| Q |
113 |
cgaactgagtatttcaacaataaaattaagttgttcaacatgaaaatattcattcatgccatgaaactacttaatttccttttagtaaaatgattaagag |
212 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31717662 |
cgaactgagtatttcaataataaaattaagttgttcaacatgaaaatattcattcatgccatgaaactacttaatttccttttagtaaaatgattaagag |
31717563 |
T |
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| Q |
213 |
cacactacactcac----ttctaatatttccttcactggtaatgttc |
255 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
31717562 |
cacactacactcacttaattctaatatttccttcactagtaatgttc |
31717516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 210
Target Start/End: Original strand, 53918985 - 53919014
Alignment:
| Q |
181 |
acttaatttccttttagtaaaatgattaag |
210 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
53918985 |
acttaatttccttttagtaaaatgattaag |
53919014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 44901462 - 44901563
Alignment:
| Q |
13 |
aatataaatctgtcacgcagttttatataatataatcaaactataagat-aaatgtacatgatcagccaaacgaatttagaaaatg-atggacaagaatt |
110 |
Q |
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|||| ||| ||||||| || ||||||| ||| | ||||||||||||||| ||||||||| ||||||||||| |||||||||||| |||||||||||| |
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| T |
44901462 |
aatacaaacctgtcacacaattttatacaatttgatcaaactataagataaaatgtacaggatcagccaaatagatttagaaaatgtgtggacaagaatt |
44901561 |
T |
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| Q |
111 |
at |
112 |
Q |
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|| |
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| T |
44901562 |
at |
44901563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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