View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18747_low_44 (Length: 267)
Name: NF18747_low_44
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18747_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 133 - 261
Target Start/End: Original strand, 28436960 - 28437088
Alignment:
| Q |
133 |
atccatatatataaatttggctttcttttatgcattaagatcatatgaaaaagacctctaaacccacctcatcacatccttttaatcacaatcacaagca |
232 |
Q |
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| T |
28436960 |
atccatatatataaatttggctttcttttatgcattaagatcatatgaaaaagacctctaaacccacctcatcacatccttttaataacaatcacaagca |
28437059 |
T |
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| Q |
233 |
tactacagtacctatcaagattcatctca |
261 |
Q |
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| T |
28437060 |
tactacagtacctatcaagattcatctca |
28437088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 28436846 - 28436895
Alignment:
| Q |
19 |
acattgtacatcataaaaaacttgtatagcagttatatatccctcattca |
68 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28436846 |
acattgtacatcataaaaaacttgtatagcaattatatatccctcattca |
28436895 |
T |
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