View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18747_low_45 (Length: 266)
Name: NF18747_low_45
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18747_low_45 |
 | |
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| [»] chr5 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0524 (1 HSPs) |
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| [»] scaffold0607 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0004 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 266
Target Start/End: Original strand, 9613186 - 9613444
Alignment:
| Q |
8 |
ccaagaatataccaaggcagttgagaaatattggataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccag |
107 |
Q |
| |
|
|||| |||| ||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
9613186 |
ccaataatacaccaaggaagtggagacatattggataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccatagaatccag |
9613285 |
T |
|
| Q |
108 |
ttagccttcatcttcccttaaaagagtcatttacctctatatcaatatgattttgggagaaattcataatagtacaattaaagttcttattccataaaca |
207 |
Q |
| |
|
||| ||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||| | ||||||||||||||||||||||||| |||||| |
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|
| T |
9613286 |
ttaacctccatcttcccttaacagagtcatttacctccatatcaatatgattctgggagaaatttgtgatagtacaattaaagttcttattccgtaaaca |
9613385 |
T |
|
| Q |
208 |
tgccaaaccacctcccctaccaatacggtcaacagaaaaacagtaataaaaagccaaca |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9613386 |
agccaaaccacctcccctaccaatacggtcaacagaaaaacagtaatcgaaagccaaca |
9613444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 59 - 228
Target Start/End: Complemental strand, 14554968 - 14554799
Alignment:
| Q |
59 |
ttccaagactctcttctcctccctccttctggcataccataaaatccagttagccttcatcttcccttaaaagagtcatttacctctatatcaatatgat |
158 |
Q |
| |
|
|||||||| |||||||||| ||||||| |||||||| ||| |||| ||||||||| ||||| ||| | ||||| ||||| ||||| ||||||||| ||| |
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|
| T |
14554968 |
ttccaagatgctcttctccttcctccttttggcatactatataatcgagttagcctccatctgcccctcaaagaatcattaacctccatatcaataagat |
14554869 |
T |
|
| Q |
159 |
tttgggagaaattcataatagtacaattaaagttcttattccataaacatgccaaaccacctcccctacc |
228 |
Q |
| |
|
||||| ||||||| | || ||||||||||||||||||||| ||||||||| |||||||||||| ||||| |
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|
| T |
14554868 |
tttggaagaaatttgtgatggtacaattaaagttcttattctataaacatgtcaaaccacctcctctacc |
14554799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 14554790 - 14554724
Alignment:
| Q |
181 |
acaattaaagttcttattccataaacatgccaaaccacctcccctaccaatacggtcaacagaaaaa |
247 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||| ||||| |||| |||||| ||||| |
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|
| T |
14554790 |
acaattaaaggtcttattccataaacatatcaaaccacctcctctaccgatacaatcaacaaaaaaa |
14554724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 50 - 266
Target Start/End: Original strand, 46094041 - 46094257
Alignment:
| Q |
50 |
cgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccagttagccttcatcttcccttaaaagagtcatttacctctatat |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||| |
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| T |
46094041 |
cgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccagttagcctccatcttcccctaaaagagtcatttacctccatat |
46094140 |
T |
|
| Q |
150 |
caatatgattttgggagaaattcataatagtacaattaaagttcttattccataaacatgccaaaccacctcccctaccaatacggtcaacagaaaaaca |
249 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
46094141 |
caatatgattttgggagaaattcgtaataatacaattaaagttcttattccataaacatgccaaaccacctcccctaccaatacggtcagcagaaaaaca |
46094240 |
T |
|
| Q |
250 |
gtaataaaaagccaaca |
266 |
Q |
| |
|
||||| |||||||||| |
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|
| T |
46094241 |
gtaatcgaaagccaaca |
46094257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 8 - 266
Target Start/End: Original strand, 3965981 - 3966239
Alignment:
| Q |
8 |
ccaagaatataccaaggcagttgagaaatattggataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccag |
107 |
Q |
| |
|
|||| |||| ||||||| ||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
3965981 |
ccaataatacaccaaggaagtggagacatatttgataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccatagaatccag |
3966080 |
T |
|
| Q |
108 |
ttagccttcatcttcccttaaaagagtcatttacctctatatcaatatgattttgggagaaattcataatagtacaattaaagttcttattccataaaca |
207 |
Q |
| |
|
||| ||| ||||||||| ||| ||||||||||||||| |||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||| |
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|
| T |
3966081 |
ttaacctccatcttcccctaatagagtcatttacctccatatcaatatgattctgggagaaatttgtgatagtacaattaaagttcttattccataaaca |
3966180 |
T |
|
| Q |
208 |
tgccaaaccacctcccctaccaatacggtcaacagaaaaacagtaataaaaagccaaca |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3966181 |
agccaaaccacctcccctaccaatacggtcaacagaaaaacagtaatcgaaagccaaca |
3966239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0524 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: scaffold0524
Description:
Target: scaffold0524; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 13 - 264
Target Start/End: Original strand, 468 - 715
Alignment:
| Q |
13 |
aatataccaaggcagttgagaaatattggataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccagttagc |
112 |
Q |
| |
|
|||| ||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
468 |
aatacaccaaggaggttgaaaaatattggataaatgccgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccagttagc |
567 |
T |
|
| Q |
113 |
cttcatcttcccttaaaagagtcatttacctctatatcaatatgattttgggagaaattcataatagtacaattaaagttcttattccataaacatgcca |
212 |
Q |
| |
|
|||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
568 |
cttcatcttcccctcaaagagtcatttacctccatatcaatatgattttgggagaaattcatgatagtgcaattaaagttcttattccataaacatgcca |
667 |
T |
|
| Q |
213 |
aaccacctcccctaccaatacggt-caacagaaaaacagtaataaaaagccaa |
264 |
Q |
| |
|
||||| |||||||||||||| || | |||||||||||| ||||||||| |
|
|
| T |
668 |
aacca-----cctaccaatacggtaaaaaaaaaaaacagtaatcaaaagccaa |
715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0607 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: scaffold0607
Description:
Target: scaffold0607; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 6961 - 6754
Alignment:
| Q |
13 |
aatataccaaggcagttgagaaatattggataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccagttagc |
112 |
Q |
| |
|
|||| ||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6961 |
aatacaccaaggaggttgaaaaatattggataaatgccgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccagttagc |
6862 |
T |
|
| Q |
113 |
cttcatcttcccttaaaagagtcatttacctctatatcaatatgattttgggagaaattcataatagtacaattaaagttcttattccataaacatgcca |
212 |
Q |
| |
|
|||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6861 |
cttcatcttcccctcaaagagtcatttacctccgtatcaatatgattttgggagaaattcatgatagtacaattaaagttcttattccataaacatgcca |
6762 |
T |
|
| Q |
213 |
aaccacct |
220 |
Q |
| |
|
|||||||| |
|
|
| T |
6761 |
aaccacct |
6754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 13 - 253
Target Start/End: Complemental strand, 2540006 - 2539765
Alignment:
| Q |
13 |
aatataccaaggcagttgagaaatattggataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccagttagc |
112 |
Q |
| |
|
|||| ||||||| ||||| |||| |||| |||| || ||||||| |||||| ||||||||||||| ||||||||||||||||||||| ||| ||||||| |
|
|
| T |
2540006 |
aatacaccaaggaagttgggaaagattgaataattgaagaagtaaattccaaaactctcttctccttcctccttctggcataccataacatcaagttagc |
2539907 |
T |
|
| Q |
113 |
cttcatctt-cccttaaaagagtcatttacctctatatcaatatgattttgggagaaattcataatagtacaattaaagttcttattccataaacatgcc |
211 |
Q |
| |
|
|| ||| || ||| | ||||||||||| ||||| |||||||| |||||||||||||||||| |||||||| ||||||| ||||||||||||||||| ||| |
|
|
| T |
2539906 |
ctccatattgcccctcaaagagtcattaacctccatatcaatgtgattttgggagaaattcgtaatagtataattaaaattcttattccataaacaagcc |
2539807 |
T |
|
| Q |
212 |
aaaccacctcccctaccaatacggtcaacagaaaaacagtaa |
253 |
Q |
| |
|
||||||||||| ||||||| |||||||||||| ||||||||| |
|
|
| T |
2539806 |
aaaccacctcctctaccaacacggtcaacagataaacagtaa |
2539765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 165
Target Start/End: Complemental strand, 48443120 - 48442962
Alignment:
| Q |
7 |
tccaagaatataccaaggcagttgagaaatattggataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatcca |
106 |
Q |
| |
|
||||| |||| ||||||| || || |||| ||||||||||||||||||||| |||||||||||||| | ||| |||||||| |||||||||||||| ||| |
|
|
| T |
48443120 |
tccaacaatacaccaaggaagctgggaaagattggataaatgtcgaagtaaattccaagactctctccgccttcctccttccggcataccataaaaacca |
48443021 |
T |
|
| Q |
107 |
gttagccttcatcttcccttaaaagagtcatttacctctatatcaatatgattttggga |
165 |
Q |
| |
|
|||| || | | | ||| | ||||| ||||| | ||| | |||||||||||||||||| |
|
|
| T |
48443020 |
gttaaccaccgtatccccctcaaagaatcattaaactccacatcaatatgattttggga |
48442962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 7 - 266
Target Start/End: Complemental strand, 32953890 - 32953631
Alignment:
| Q |
7 |
tccaagaatataccaaggcagttgagaaatattggataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatcca |
106 |
Q |
| |
|
||||| |||| ||||||| |||||||||| |||||||||||||| |||||| ||||| |||||||||| || || ||||| ||||||||||| || ||| |
|
|
| T |
32953890 |
tccaataatacaccaaggaagttgagaaagattggataaatgtctaagtaaattccaggactctcttcgtctaccaccttccggcataccatagaaacca |
32953791 |
T |
|
| Q |
107 |
gttagccttcatcttcccttaaaagagtcatttacctctatatcaatatgattttgggagaaattcataatagtacaattaaagttcttattccataaac |
206 |
Q |
| |
|
|||| ||| ||||| ||| | ||||| ||| | ||||| ||||||||||||||||||||||||||| | ||| |||||| ||| |||||||||||||||| |
|
|
| T |
32953790 |
gttaacctccatctacccctcaaagaatcagtaacctccatatcaatatgattttgggagaaattcgtgatattacaatgaaaattcttattccataaac |
32953691 |
T |
|
| Q |
207 |
atgccaaaccacctcccctaccaatacggtcaacagaaaaacagtaataaaaagccaaca |
266 |
Q |
| |
|
| |||||||| ||||||||||| ||||||| |||| |||||||| | ||||||||||| |
|
|
| T |
32953690 |
aagccaaacctcctcccctaccgatacggtagacagtgaaacagtagtcaaaagccaaca |
32953631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 23776142 - 23776366
Alignment:
| Q |
7 |
tccaagaatataccaaggcagttgagaaatattggataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatcca |
106 |
Q |
| |
|
||||| |||| ||||||| || || |||| |||||||| |||||||||||| ||||||||||| || | || |||||||| |||||||||||||| ||| |
|
|
| T |
23776142 |
tccaacaatacaccaaggaagctgggaaagattggatatatgtcgaagtaaattccaagactccctccctcttcctccttccggcataccataaaaacca |
23776241 |
T |
|
| Q |
107 |
gttagccttcatcttcccttaaaagagtcatttacctctatatcaatatgattttgggagaaattcataatagtacaattaaagttcttattccataaac |
206 |
Q |
| |
|
|||| ||| ||||||||| | ||||| ||||| || || | |||||||||||||||||| || || | |||| |||||||| |||||||||||||||| |
|
|
| T |
23776242 |
gttaacctccatcttcccctcaaagaatcattaacatccacatcaatatgattttgggaaaagtttgtgatagagcaattaaaattcttattccataaac |
23776341 |
T |
|
| Q |
207 |
atgccaaaccacctcccctaccaat |
231 |
Q |
| |
|
| |||||||| |||||||||||||| |
|
|
| T |
23776342 |
aagccaaacctcctcccctaccaat |
23776366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 212986 - 212857
Alignment:
| Q |
7 |
tccaagaatataccaaggcagttgagaaatattggataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatcca |
106 |
Q |
| |
|
||||| |||| ||||||| || ||||||| ||||||||||||||||||||| |||||||||||||| | ||||||||||| |||||||||||||||||| |
|
|
| T |
212986 |
tccaacaatacaccaaggaagctgagaaagattggataaatgtcgaagtaaattccaagactctctccgtctccctccttc-ggcataccataaaatcca |
212888 |
T |
|
| Q |
107 |
gttagccttcatcttcccttaaaagagtcat |
137 |
Q |
| |
|
|||| ||| ||||||||| | ||||| |||| |
|
|
| T |
212887 |
gttaacctccatcttcccctcaaagaatcat |
212857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 176 - 266
Target Start/End: Original strand, 19916305 - 19916395
Alignment:
| Q |
176 |
atagtacaattaaagttcttattccataaacatgccaaaccacctcccctaccaatacggtcaacagaaaaacagtaataaaaagccaaca |
266 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||| | |||||||||||||||||| ||| ||| ||||||||||||||||||||||| ||||| |
|
|
| T |
19916305 |
atagtacaatcaaaattcttattccataaacaagtcaaaccacctcccctacccataaggttaacagaaaaacagtaataaaaagtcaaca |
19916395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 163
Target Start/End: Original strand, 19915602 - 19915758
Alignment:
| Q |
7 |
tccaagaatataccaaggcagttgagaaatatt-ggataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatcc |
105 |
Q |
| |
|
||||| |||| ||||||| |||||||||| ||| |||||| || |||||||| ||||| |||||||||||||| || || |||||||||||| || || |
|
|
| T |
19915602 |
tccaataatacaccaaggaagttgagaaagatttggataactgccgaagtaaattccaggactctcttctccttccatttt-tggcataccatagaaacc |
19915700 |
T |
|
| Q |
106 |
agttagccttcatcttcccttaaaagagtcatttacctctatatcaatatgattttgg |
163 |
Q |
| |
|
||| | ||| |||||||| | ||||||||||| ||||| |||||||||| ||||||| |
|
|
| T |
19915701 |
agtcaacctccatcttcctctcaaagagtcattaacctccatatcaatataattttgg |
19915758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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