View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18747_low_47 (Length: 256)

Name: NF18747_low_47
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18747_low_47
NF18747_low_47
[»] chr7 (4 HSPs)
chr7 (1-238)||(36348920-36349164)
chr7 (1-108)||(36360184-36360288)
chr7 (148-177)||(26253172-26253201)
chr7 (193-238)||(36360452-36360497)
[»] chr2 (3 HSPs)
chr2 (144-176)||(13027830-13027862)
chr2 (145-178)||(25084200-25084233)
chr2 (149-177)||(14958692-14958720)
[»] chr4 (2 HSPs)
chr4 (138-177)||(33975331-33975370)
chr4 (145-177)||(39767019-39767051)
[»] chr1 (2 HSPs)
chr1 (189-236)||(21186489-21186536)
chr1 (145-177)||(46917274-46917306)
[»] chr8 (1 HSPs)
chr8 (145-177)||(42309905-42309937)
[»] chr6 (1 HSPs)
chr6 (145-177)||(18153709-18153741)
[»] chr3 (3 HSPs)
chr3 (137-177)||(20915875-20915915)
chr3 (137-177)||(20924837-20924877)
chr3 (149-177)||(35317635-35317663)


Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 36348920 - 36349164
Alignment:
Q  1 gaatctgattggtttgagtagataaatattatcttgaggtgcaacaaaaactgcttcccctcct---gaagaacatactgcttcccaagtcttctcgaat 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||    
T  36348920 gaatctgattggtttgagtagataaatattatcttgaggtgcaacaaaaactgcttcccctcctcctgaagaacatactgcttcccaagccttctcgaat 36349019  T
Q  98 gcctgaatattg----tgtatcccgcatgggaacaaatgagtatattatgatttgaattaaatatgtttttggtccctataaatgatgagtgtgttatat 193  Q
    |||||||||||     ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  36349020 gcctgaatattaattatgtatcccgcatgggaacagatgagtatattatgatttgaattaaatatgtttttggtctctataaatgatgagtgtattatat 36349119  T
Q  194 atacctgcgtgtcatcagttttaccatcccctttagctccataat 238  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  36349120 atacctgtgtgtcatcagttttaccatcccctttagctccataat 36349164  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 36360184 - 36360288
Alignment:
Q  1 gaatctgattggtttgagtagataaatattatcttgaggtgcaacaaaaactgcttcccctcctgaagaacatactgcttcccaagtcttctcgaatgcc 100  Q
    ||||||||||||||||||||||||| ||| |||||||||||| || ||||||| || |   ||||| ||||||||| ||||||||| ||||| |||||||    
T  36360184 gaatctgattggtttgagtagataattataatcttgaggtgccactaaaactgattgc---cctgacgaacatactacttcccaagccttcttgaatgcc 36360280  T
Q  101 tgaatatt 108  Q
    ||||||||    
T  36360281 tgaatatt 36360288  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 177
Target Start/End: Original strand, 26253172 - 26253201
Alignment:
Q  148 gaattaaatatgtttttggtccctataaat 177  Q
    ||||||||||||||||||||||||||||||    
T  26253172 gaattaaatatgtttttggtccctataaat 26253201  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 36360452 - 36360497
Alignment:
Q  193 tatacctgcgtgtcatcagttttaccatcccctttagctccataat 238  Q
    |||||||| |||||||| || | |||||||||||||||||||||||    
T  36360452 tatacctgtgtgtcatccgtatgaccatcccctttagctccataat 36360497  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 176
Target Start/End: Complemental strand, 13027862 - 13027830
Alignment:
Q  144 atttgaattaaatatgtttttggtccctataaa 176  Q
    |||||||||||||||||||||||||||||||||    
T  13027862 atttgaattaaatatgtttttggtccctataaa 13027830  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 178
Target Start/End: Complemental strand, 25084233 - 25084200
Alignment:
Q  145 tttgaattaaatatgtttttggtccctataaatg 178  Q
    ||||| ||||||||||||||||||||||||||||    
T  25084233 tttgagttaaatatgtttttggtccctataaatg 25084200  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 177
Target Start/End: Complemental strand, 14958720 - 14958692
Alignment:
Q  149 aattaaatatgtttttggtccctataaat 177  Q
    |||||||||||||||||||||||||||||    
T  14958720 aattaaatatgtttttggtccctataaat 14958692  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 177
Target Start/End: Complemental strand, 33975370 - 33975331
Alignment:
Q  138 attatgatttgaattaaatatgtttttggtccctataaat 177  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  33975370 attatgatttgggttaaatatgtttttggtccctataaat 33975331  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 39767051 - 39767019
Alignment:
Q  145 tttgaattaaatatgtttttggtccctataaat 177  Q
    ||||| |||||||||||||||||||||||||||    
T  39767051 tttgagttaaatatgtttttggtccctataaat 39767019  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 21186489 - 21186536
Alignment:
Q  189 tatatatacctgcgtgtcatcagttttaccatcccctttagctccata 236  Q
    |||||||||||  |||||||||||||||||||| |||| |||||||||    
T  21186489 tatatatacctttgtgtcatcagttttaccatctccttgagctccata 21186536  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 46917274 - 46917306
Alignment:
Q  145 tttgaattaaatatgtttttggtccctataaat 177  Q
    ||||| |||||||||||||||||||||||||||    
T  46917274 tttgagttaaatatgtttttggtccctataaat 46917306  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 42309937 - 42309905
Alignment:
Q  145 tttgaattaaatatgtttttggtccctataaat 177  Q
    |||| ||||||||||||||||||||||||||||    
T  42309937 tttggattaaatatgtttttggtccctataaat 42309905  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 18153709 - 18153741
Alignment:
Q  145 tttgaattaaatatgtttttggtccctataaat 177  Q
    ||||| |||||||||||||||||||||||||||    
T  18153709 tttgagttaaatatgtttttggtccctataaat 18153741  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 20915915 - 20915875
Alignment:
Q  137 tattatgatttgaattaaatatgtttttggtccctataaat 177  Q
    |||||| |||||  |||||||||||||||||||||||||||    
T  20915915 tattattatttgggttaaatatgtttttggtccctataaat 20915875  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 20924877 - 20924837
Alignment:
Q  137 tattatgatttgaattaaatatgtttttggtccctataaat 177  Q
    |||||| |||||  |||||||||||||||||||||||||||    
T  20924877 tattattatttgggttaaatatgtttttggtccctataaat 20924837  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 177
Target Start/End: Complemental strand, 35317663 - 35317635
Alignment:
Q  149 aattaaatatgtttttggtccctataaat 177  Q
    |||||||||||||||||||||||||||||    
T  35317663 aattaaatatgtttttggtccctataaat 35317635  T

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