View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18747_low_50 (Length: 251)
Name: NF18747_low_50
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18747_low_50 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 9063517 - 9063277
Alignment:
| Q |
9 |
gaagaaaatggaattagctaggatatgctaagg-agttgtgtgagtttgttgtgtttgagttagggttgttagagaccagttggtggttatataacaaga |
107 |
Q |
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| T |
9063517 |
gaagataatggacttagctatgagatgctaaggtagttgtgtgaatttgttgggtttgagctatggttgttagagaccagttggtgtttatataacaaga |
9063418 |
T |
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| Q |
108 |
agaggaattgttggagtgattatggcacatgaatgtcacaaaaggagtgtggttttatgcttaaaagtgtgagcattgcttggtgcctcatgtgtgatgc |
207 |
Q |
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| T |
9063417 |
---gaaattgttaaagtgattatggcacatgaatgacacaaaaggagtgtggttttatgcttaaaagtgtgagcattgcttggtgcctcatgtgtgatgc |
9063321 |
T |
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| Q |
208 |
gattttgtttaggcacattgcaaaacttcttccacgttggaaaa |
251 |
Q |
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| T |
9063320 |
gattttgtttagccacattgcaaaacttcttccacgttggaaaa |
9063277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 9 - 238
Target Start/End: Complemental strand, 9060242 - 9060011
Alignment:
| Q |
9 |
gaagaaaatggaattagctaggatatgctaagg-agttgtgtgagtttgttgtgtttgagttagggttgttagagacca-gttggtggttatataacaag |
106 |
Q |
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| T |
9060242 |
gaagataatggaattagctaggagatgctaaggtagttgtgtaagtttgttgtgtttgagttagggttgttagacaccatgttggtgtttatataacaag |
9060143 |
T |
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| Q |
107 |
aagaggaattgttggagtgattatggcacatgaatgtcacaaaaggagtgtggttttatgcttaaaagtgtgagcattgcttggtgcctcatgtgtgatg |
206 |
Q |
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| T |
9060142 |
aagagagattgttggagtgattatggcacatgaatgtcacaaaaggagtgtggatttatgcttaaaagtgtgagcatggcttggtgcctcatgtgtgatt |
9060043 |
T |
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| Q |
207 |
cgattttgtttaggcacattgcaaaacttctt |
238 |
Q |
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| T |
9060042 |
caattttgtccagccaaattgcaaaacctctt |
9060011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 62 - 251
Target Start/End: Complemental strand, 9077169 - 9076979
Alignment:
| Q |
62 |
tttgagttagggttgttagagacca-gttggtggttatataacaagaagaggaattgttggagtgattatggcacatgaatgtcacaaaaggagtgtggt |
160 |
Q |
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| T |
9077169 |
tttgagttagggttgttagagaccatgttggtgtttatataacaagaagagagattgttggagtgattatggcacatgaatgtcacaaaaggagtgtgga |
9077070 |
T |
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| Q |
161 |
tttatgcttaaaagtgtgagcattgcttggtgcctcatgtgtgatgcgattttgtttaggcacattgcaaaacttcttccacgttggaaaa |
251 |
Q |
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| T |
9077069 |
tttatgcttaaaagtgtgagcatggcttggtgcctcatgtgtgatgcgattttgtttagccacattggaaaacctcttacacgtcggaaaa |
9076979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 89 - 211
Target Start/End: Complemental strand, 9072517 - 9072395
Alignment:
| Q |
89 |
tggtggttatataacaagaagaggaattgttggagtgattatggcacatgaatgtcacaaaaggagtgtggttttatgcttaaaagtgtgagcattgctt |
188 |
Q |
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| T |
9072517 |
tggtgtttatataacaagaagaaaagttgttggattcgtttttccacatgaatgtcacaaaaggagtgtggatttatgcttaaaagtgtgagcatggctt |
9072418 |
T |
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| Q |
189 |
ggtgcctcatgtgtgatgcgatt |
211 |
Q |
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| T |
9072417 |
ggtgcctcatgtgtgatccgatt |
9072395 |
T |
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