View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18747_low_52 (Length: 249)
Name: NF18747_low_52
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18747_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 40556558 - 40556316
Alignment:
| Q |
1 |
ctgtaactttcttaaaatcatcgttgcattccgaatcagcagcatagtactcctggttatttgaccgaagaatatgagaaacatcatctttgaattgatt |
100 |
Q |
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| T |
40556558 |
ctgtaactttcttaaaatcatcgttgcattccgaatcagcagcatagtactcccggttatttgaccgaagaatataagaaacatcatttttgaattgatt |
40556459 |
T |
|
| Q |
101 |
agctaagaacttagatcgcaaacataataaattttccatcatccgataatcatcaccaccatattcattcaatattctagaaacaaaaacactttcctcc |
200 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40556458 |
agctaagaacttagatcgcaaacttagtaaattttccatcatccgataatcatcaccaccatattcattcaatattctagaaacaaaaacactttcctcc |
40556359 |
T |
|
| Q |
201 |
attttcgatgttgaagctccagtgacttttcttccttcttctc |
243 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40556358 |
attttcgatgttgaagctccagtgacttttcttccttattctc |
40556316 |
T |
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