View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18747_low_54 (Length: 243)
Name: NF18747_low_54
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18747_low_54 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 7327329 - 7327554
Alignment:
| Q |
1 |
ccttatcaactttgctctaccaaacccctttgagatttgaagtcgatctgttataccaagatgtgccataagaagccatacatgtgttaataattcacca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7327329 |
ccttatcaactttgctctaccaaacccctttgagatttgaagtcgatctgttataccaagatgtgccataagaagccatacatgtgttaataattcacca |
7327428 |
T |
|
| Q |
101 |
ccatgccttagatgctgagcatgatgaattacctgacaatggcaagcagcataagctagcatttcaacccaaacttgagtgataaacttccacatctctt |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7327429 |
ccatgccttagatgttgagcatgatgaattacctgacaatggcaagcagcataagctagcatttcaacccaaacttgagttataaacttccacatctctt |
7327528 |
T |
|
| Q |
201 |
ttgtctcccattctacatcatcattc |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
7327529 |
ttgtctcccattctacatcatcattc |
7327554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 6805186 - 6805407
Alignment:
| Q |
1 |
ccttatcaactttgctctaccaaacccctttgagatttgaagtcgatctgttataccaagatgtgccataagaagccatacatgtgttaataattcacca |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||| ||| |
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| T |
6805186 |
ccttatcaactttgctctaccaaacccctttgagatttgaagtcgatctgtgataccaaaatgtgccataagaagccatacatgtgttaatagttcccca |
6805285 |
T |
|
| Q |
101 |
ccatgccttagatgctgagcatgatgaattacctgacaatggcaagcagcataagctagcatttcaacccaaacttgagtgataaacttccacatctctt |
200 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
6805286 |
ccatgtcttaggtgctgagcatgatgaattacctgacaatggcaagcagcataagctagcatttcaacccaaacttgagttataaacttccacatctttt |
6805385 |
T |
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| Q |
201 |
ttgtctcccattctacatcatc |
222 |
Q |
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|||||||||||||| ||||||| |
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| T |
6805386 |
ttgtctcccattcttcatcatc |
6805407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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