View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18747_low_59 (Length: 234)
Name: NF18747_low_59
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18747_low_59 |
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Alignment Details
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 45909111 - 45908959
Alignment:
| Q |
1 |
tcatgaaaggcgatacatttaacgtcagcaaattatcatcaacatagtcaatatatgaaacacta--------------acatagacacgttgacataga |
86 |
Q |
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| T |
45909111 |
tcatgaaaggcaatacatttaacgtcagcaaattatcatcaacatagtcaatatatgaaacactaacacagacacagtcacacagacacgttgacgtgga |
45909012 |
T |
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| Q |
87 |
taataatttgagaaatgaaagtaattgaatgtaatcaaacggacactggatat |
139 |
Q |
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| T |
45909011 |
taataatttgagaaatgaaagtaattgaatgtaatcaaacggacactagatat |
45908959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 45908972 - 45908911
Alignment:
| Q |
155 |
cggacactgaatatatgttcgatttaattctaaagtgtcgatactacgtagtagccaaacct |
216 |
Q |
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| T |
45908972 |
cggacactagatatatgttcgatttaattctaaagtgtcgatactacgtagtagccaaacct |
45908911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 7251030 - 7250976
Alignment:
| Q |
71 |
gacacgttgacatagataataatttgagaaa-tgaaagtaattgaatgtaatcaa |
124 |
Q |
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| T |
7251030 |
gacacgttgacaccaataataatttgagaaaatgaaagtaattgaatataatcaa |
7250976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 4070364 - 4070417
Alignment:
| Q |
69 |
tagacacgttgacatagataataatttgagaaatga-aagtaattgaatgtaat |
121 |
Q |
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| T |
4070364 |
tagacacatagacatagataataatttgagaaataagaagtgattgaatgtaat |
4070417 |
T |
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