View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18747_low_6 (Length: 609)
Name: NF18747_low_6
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18747_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 1e-85; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 11 - 183
Target Start/End: Original strand, 9828923 - 9829095
Alignment:
| Q |
11 |
tcgtgctagtccacttgaagatgtgtactcgaactgaccttgcgaagcaacgcgtacaaaacaaatggttctcatcgtaggcttccccgaacacgacata |
110 |
Q |
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| T |
9828923 |
tcgtgctagtccacttgaagatgtatactcgaactgaccttgcgaagcaacgcctacaaaacaaatggttctcattgtaggcttccccgaacacgacata |
9829022 |
T |
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| Q |
111 |
caatgtcatcaactccttctagtggttgcattcaaattactttgcggtataaatttttacattgaccttttgc |
183 |
Q |
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| T |
9829023 |
caatgtcatcaactccttctagtggttgcattcaaattactttgcggtataaatttttacattgaccttttgc |
9829095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 416 - 594
Target Start/End: Original strand, 9829343 - 9829521
Alignment:
| Q |
416 |
tactaaagtactatactatagggccatctttaaaatgagtatatcctctaacggttcacactaaaaacttcccgagtgtctctctccacttgtagttgaa |
515 |
Q |
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| T |
9829343 |
tactaaagtactatactatagggccatctttcaaatgagtatatcctctaacggttcacactgaaaactttccgagtctctctctgtacttgtagttgaa |
9829442 |
T |
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| Q |
516 |
ttaagtcgtaaaacaaccggctaattggctcattatcatggagtttaannnnnnncaagttgattagtggttaaaaatt |
594 |
Q |
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| T |
9829443 |
ttaagtcgtaaaacaaccagctaattggctcattatcatggagtttaatttttttcaagttgattaatggttaaaaatt |
9829521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 239 - 390
Target Start/End: Original strand, 9829163 - 9829313
Alignment:
| Q |
239 |
tataatgcaaaatagcttttatcaaagaacatccc-catgcatggaaaaagttttacatccgggacccttgtcaattcaaagaaaatgaaatcataggat |
337 |
Q |
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| T |
9829163 |
tataatgcaaaatagcttttatcaaagaacatcccgcatgcatggaaagagttttacatccgggacccttgtcaactca--gaaaatgaaatcataagtt |
9829260 |
T |
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| Q |
338 |
ttttcttacaataaaatgaaaccttaaagtaactcaagaagaattaataatgg |
390 |
Q |
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| T |
9829261 |
ttttcttacaataaaatgaaaccttaaagtaactcaagaagaattaataatgg |
9829313 |
T |
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