View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18747_low_63 (Length: 207)
Name: NF18747_low_63
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18747_low_63 |
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Alignment Details
Target: chr1 (Bit Score: 112; Significance: 8e-57; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 12 - 191
Target Start/End: Complemental strand, 9125896 - 9125717
Alignment:
| Q |
12 |
aagaatatgtaaccgtttatatgcttttgcaggttcaattatattggggttggtcaccattgtttctgtaaagatttatctacatttcagagaaaaagta |
111 |
Q |
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| T |
9125896 |
aagaaaatctaaccgttcatattctattgcaggttcaattttattggggttgctcaccattgcatttataaagatttatctacatttcagagaaaaagaa |
9125797 |
T |
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| Q |
112 |
gaagatcaagttaggattgaaaagtttttagaggattatagagcacaaaagcctgcaagattttcatattctgatataaa |
191 |
Q |
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| T |
9125796 |
gaagatcaagttagagttgataggtttttagaggattatagagcacaaaagcctgccagattttcatattctgatataaa |
9125717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 39 - 191
Target Start/End: Complemental strand, 9070401 - 9070249
Alignment:
| Q |
39 |
tgcaggttcaattatattggggttggtcaccattgtttctgtaaagatttatctacatttcagagaaaaagtagaagatcaagttaggattgaaaagttt |
138 |
Q |
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| T |
9070401 |
tgcaggttcaattatattgggaatgggcaccattgtatttattaagatttatctgcatttcagagaaaaagaagaagatcaagttagaattgataagttt |
9070302 |
T |
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| Q |
139 |
ttagaggattatagagcacaaaagcctgcaagattttcatattctgatataaa |
191 |
Q |
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| T |
9070301 |
ttagaggattatagagcccaaaagcctgccagattttcatactctgatataaa |
9070249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 38 - 191
Target Start/End: Complemental strand, 9086701 - 9086548
Alignment:
| Q |
38 |
ttgcaggttcaattatattggggttggtcaccattgtttctgtaaagatttatctacatttcagagaaaaagtagaagatcaagttaggattgaaaagtt |
137 |
Q |
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| T |
9086701 |
ttgcagggtcaattatattggggttggtcatcattgcaattacaaagatttatctacattttaggggaaaaaaagaagatcaagttagaattgataagtt |
9086602 |
T |
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| Q |
138 |
tttagaggattatagagcacaaaagcctgcaagattttcatattctgatataaa |
191 |
Q |
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| T |
9086601 |
tttagatgattttagagcacaaaagcctgctagattttcctatgctgatataaa |
9086548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 41 - 191
Target Start/End: Complemental strand, 8979689 - 8979539
Alignment:
| Q |
41 |
caggttcaattatattggggttggtcaccattgtttctgtaaagatttatctacatttcagagaaaaagtagaagatcaagttaggattgaaaagttttt |
140 |
Q |
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| T |
8979689 |
caggttcaattgttttggggttggttaccattatatttattaagatctatttatattttagaaaaaaagaagaagatcaagttagagttgacaagttttt |
8979590 |
T |
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| Q |
141 |
agaggattatagagcacaaaagcctgcaagattttcatattctgatataaa |
191 |
Q |
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| T |
8979589 |
agaggattatagagcacaacaacctactagattttcttttgctgatataaa |
8979539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 191
Target Start/End: Complemental strand, 8862224 - 8862139
Alignment:
| Q |
106 |
aaagtagaagatcaagttaggattgaaaagtttttagaggattatagagcacaaaagcctgcaagattttcatattctgatataaa |
191 |
Q |
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| T |
8862224 |
aaagaagaggatcaaattagagttgataagtttttagaggattatcgagcacaaaaacctactagattttcttatgccgatataaa |
8862139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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