View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18747_low_8 (Length: 556)

Name: NF18747_low_8
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18747_low_8
NF18747_low_8
[»] chr5 (2 HSPs)
chr5 (19-343)||(23171475-23171797)
chr5 (362-529)||(23171270-23171437)
[»] chr8 (6 HSPs)
chr8 (145-278)||(39460796-39460929)
chr8 (140-252)||(30873412-30873526)
chr8 (148-235)||(9208650-9208738)
chr8 (198-253)||(25128164-25128219)
chr8 (198-255)||(1282917-1282973)
chr8 (198-235)||(37437843-37437880)
[»] chr4 (2 HSPs)
chr4 (145-277)||(27587691-27587823)
chr4 (205-246)||(28038093-28038134)
[»] scaffold0018 (1 HSPs)
scaffold0018 (145-253)||(30178-30288)
[»] chr7 (4 HSPs)
chr7 (164-267)||(39586500-39586603)
chr7 (145-235)||(16664493-16664585)
chr7 (145-235)||(17638863-17638955)
chr7 (174-247)||(6455459-6455533)
[»] chr2 (2 HSPs)
chr2 (145-231)||(22302387-22302476)
chr2 (198-235)||(13913847-13913884)
[»] chr1 (4 HSPs)
chr1 (198-267)||(17606161-17606228)
chr1 (198-246)||(14188514-14188562)
chr1 (198-235)||(14485497-14485534)
chr1 (198-246)||(18297382-18297430)
[»] chr3 (2 HSPs)
chr3 (155-272)||(49785829-49785946)
chr3 (145-189)||(55273466-55273511)
[»] scaffold0013 (1 HSPs)
scaffold0013 (149-235)||(94447-94535)
[»] chr6 (2 HSPs)
chr6 (174-246)||(19986837-19986910)
chr6 (163-246)||(12176298-12176382)


Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 343
Target Start/End: Complemental strand, 23171797 - 23171475
Alignment:
Q  19 acaaattgcacgtattgtgtaatatttagtgtggagtggacgttatatttatatatccaatgatgaaaataaaacgtcttttagatctataaatgtcgtg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23171797 acaaattgcacgtattgtgtaatatttagtgtggagtggacgttatatttatatatccaatgatgaaaataaaacgtcttttagatctataaatgtcgtg 23171698  T
Q  119 ttcacgaccattaatattactgtaatttggtgcaatttaacaaatattttataataaaattattaaagtaaaccccatgtattagttttaaataatatag 218  Q
    |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23171697 ttcacagccattaatattactgtaatttggtgcaatttaacaaatattttataataaaattattaaagtaaaccccatgtattagttttaaataatatag 23171598  T
Q  219 atgaatgatatttttgttccaataaaaagatgcacacacttgctaacttagaccttcatannnnnnnctggttgaatcagagaaaaattatatttattgg 318  Q
    ||||||||||||||||||||||||||||||||  | ||||||||| ||||||||||||||       |||||||||||||||| ||||| ||||||||||    
T  23171597 atgaatgatatttttgttccaataaaaagatg--cgcacttgctagcttagaccttcatatttttttctggttgaatcagagacaaattttatttattgg 23171500  T
Q  319 atctctataattctatttttctttt 343  Q
     |||||||||||||||| |||||||    
T  23171499 gtctctataattctattgttctttt 23171475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 362 - 529
Target Start/End: Complemental strand, 23171437 - 23171270
Alignment:
Q  362 gcatatattagtggatctatttaagtattatttttaatttactataattaaagttattgagtccttgatagatttttcttttt--aaatcataaataaat 459  Q
    |||||||||||||||||||||||||||| ||||||| |||| ||||||| ||||||||||||||||||||||||||| |||||  |||||||||||||||    
T  23171437 gcatatattagtggatctatttaagtat-atttttagtttattataattgaagttattgagtccttgatagatttttttttttttaaatcataaataaat 23171339  T
Q  460 gtgtacatgtaaaattcgtttaaatatcttttttaatttactaccattatcgatgctcttaactctttta 529  Q
    || ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||    
T  23171338 gtatacatgtaaaattcgtttaaagatcatttttaatttactaccattatcgatgctc-taactctttta 23171270  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 145 - 278
Target Start/End: Original strand, 39460796 - 39460929
Alignment:
Q  145 ttggtgcaatttaacaaatattttataat-aaaattattaaagtaaaccccatg-tattagttttaaataatatagatgaatgatatttttgttccaata 242  Q
    ||||||||| ||||||||| | || |||| ||||||| |||||||| || || | |||||||||||||||||| ||||||| ||||||||||| | ||||    
T  39460796 ttggtgcaagttaacaaatctgttttaatgaaaattactaaagtaaccctcaagctattagttttaaataataaagatgaaggatatttttgtccaaata 39460895  T
Q  243 aaaagatgcacacacttgctaacttagaccttcata 278  Q
    ||||| ||  |||  |||||||||| ||||||||||    
T  39460896 aaaaggtg--cacttttgctaacttggaccttcata 39460929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 140 - 252
Target Start/End: Complemental strand, 30873526 - 30873412
Alignment:
Q  140 gtaatttggtgcaatttaacaaatattttataat-aaaattattaaagtaaaccccatg-tattagttttaaataatatagatgaatgatatttttgttc 237  Q
    |||| ||||||||| ||||||||||| || |||| ||||||| |||||||| || ||   ||||| |||||||||||| ||||||| ||||||||||| |    
T  30873526 gtaaattggtgcaagttaacaaatatgttttaatgaaaattactaaagtaaccctcaaactattaattttaaataataaagatgaaagatatttttgtcc 30873427  T
Q  238 caataaaaagatgca 252  Q
     |||||||| |||||    
T  30873426 aaataaaaaaatgca 30873412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 235
Target Start/End: Complemental strand, 9208738 - 9208650
Alignment:
Q  148 gtgcaatttaacaaatattttataataaaattattaaagtaaaccccatg-tattagttttaaataatatagatgaatgatatttttgt 235  Q
    |||||| ||||||||||| || |||| |||||| |||||||| || |  | |||||||||||||||||| ||||||| ||||| |||||    
T  9208738 gtgcaaattaacaaatatgttttaatgaaattactaaagtaaccctctagctattagttttaaataataaagatgaaggatatctttgt 9208650  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 253
Target Start/End: Complemental strand, 25128219 - 25128164
Alignment:
Q  198 tattagttttaaataatatagatgaatgatatttttgttccaataaaaagatgcac 253  Q
    |||||||||||||||||| |||| |||||||||||||| | ||| ||||| |||||    
T  25128219 tattagttttaaataataaagattaatgatatttttgtccaaatgaaaaggtgcac 25128164  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 1282973 - 1282917
Alignment:
Q  198 tattagttttaaataatatagatgaatgatatttttgttccaataaaaagatgcacac 255  Q
    ||||||||||||| |||| ||||||||||| ||||||||| |||||||| | ||||||    
T  1282973 tattagttttaaaaaataaagatgaatgat-tttttgttcaaataaaaataggcacac 1282917  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 235
Target Start/End: Original strand, 37437843 - 37437880
Alignment:
Q  198 tattagttttaaataatatagatgaatgatatttttgt 235  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  37437843 tattagttttaaataataaagatgaatggtatttttgt 37437880  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 145 - 277
Target Start/End: Original strand, 27587691 - 27587823
Alignment:
Q  145 ttggtgcaatttaacaaatattttataat-aaaattattaaagtaaaccccatg-tattagttttaaataatatagatgaatgatatttttgttccaata 242  Q
    ||||||||| ||||||||||| || |||| ||||||| |||||||| || || | |||||||||||||||||||| || || ||||||||||| |  |||    
T  27587691 ttggtgcaaattaacaaatatgttttaatgaaaattactaaagtaaccctcaagctattagttttaaataatataaataaaggatatttttgtccatata 27587790  T
Q  243 aaaagatgcacacacttgctaacttagaccttcat 277  Q
    |||||  | ||||  |||||||||| |||||||||    
T  27587791 aaaag--ggacacttttgctaacttggaccttcat 27587823  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 28038134 - 28038093
Alignment:
Q  205 tttaaataatatagatgaatgatatttttgttccaataaaaa 246  Q
    ||||||||||| ||||||||||||||||||| | ||||||||    
T  28038134 tttaaataataaagatgaatgatatttttgtccaaataaaaa 28038093  T

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Target: scaffold0018 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 145 - 253
Target Start/End: Complemental strand, 30288 - 30178
Alignment:
Q  145 ttggtgcaatttaacaaatattttataat-aaaattattaaagtaaaccccatg-tattagttttaaataatatagatgaatgatatttttgttccaata 242  Q
    ||||||||| ||||||||||| || |||| ||||||| ||||||||  | || | |||||||||||||||||| ||||||| ||||||||||| | |||     
T  30288 ttggtgcaagttaacaaatatgttttaatgaaaattactaaagtaacgctcaagctattagttttaaataataaagatgaaggatatttttgtccaaatg 30189  T
Q  243 aaaagatgcac 253  Q
    ||||| |||||    
T  30188 aaaaggtgcac 30178  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 164 - 267
Target Start/End: Original strand, 39586500 - 39586603
Alignment:
Q  164 attttataataaaa-ttattaaagtaaaccccatgt-attagttttaaataatatagatgaatgatatttttgttccaataaaaagatgcacacacttgc 261  Q
    |||||||||||||| ||| |||||||| || || || ||||||||||||||||| ||||||||||||||||||| | ||| ||||| ||   ||||||||    
T  39586500 attttataataaaaattactaaagtaaccctcaagttattagttttaaataataaagatgaatgatatttttgtccaaatgaaaaggtg--aacacttgc 39586597  T
Q  262 taactt 267  Q
    ||||||    
T  39586598 taactt 39586603  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 16664585 - 16664493
Alignment:
Q  145 ttggtgcaatttaacaaatattttataataaaa-ttattaaagtaaaccccatg-tattagttttaaataatatagatgaatgatatttttgt 235  Q
    ||||||||  |||||||||||||||| |||||| |||||||||||| || || | |||||||||| ||||||| ||||||| | |||||||||    
T  16664585 ttggtgcagattaacaaatattttatcataaaagttattaaagtaaccctcaagctattagtttttaataataaagatgaaggttatttttgt 16664493  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 17638955 - 17638863
Alignment:
Q  145 ttggtgcaatttaacaaatattttataataaaa-ttattaaagtaaaccccatg-tattagttttaaataatatagatgaatgatatttttgt 235  Q
    ||||||||  |||||||||||||||| |||||| |||||||||||| || || | |||||||||| ||||||| ||||||| | |||||||||    
T  17638955 ttggtgcagattaacaaatattttatcataaaagttattaaagtaaccctcaagctattagtttttaataataaagatgaaggttatttttgt 17638863  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 6455533 - 6455459
Alignment:
Q  174 aaaattattaaagtaaaccccatg-tattagttttaaataatatagatgaatgatatttttgttccaataaaaag 247  Q
    ||||||| |||||||| || || | |||||||||||||||||| ||||||| ||||||||||| | |||||||||    
T  6455533 aaaattactaaagtaatcctcaagctattagttttaaataataaagatgaaggatatttttgtccaaataaaaag 6455459  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 145 - 231
Target Start/End: Original strand, 22302387 - 22302476
Alignment:
Q  145 ttggtgcaatttaacaaatattttataat--aaaattattaaagtaaaccccatg-tattagttttaaataatatagatgaatgatattt 231  Q
    ||||||||| ||||||||||| || ||||  ||||||| |||||||| || || | |||||||||||||||||| |||||||||||||||    
T  22302387 ttggtgcaagttaacaaatatgttttaatgcaaaattactaaagtaaccctcaagctattagttttaaataataaagatgaatgatattt 22302476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 198 - 235
Target Start/End: Original strand, 13913847 - 13913884
Alignment:
Q  198 tattagttttaaataatatagatgaatgatatttttgt 235  Q
    |||||||||||||||||| |||||||||||||||||||    
T  13913847 tattagttttaaataataaagatgaatgatatttttgt 13913884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 17606161 - 17606228
Alignment:
Q  198 tattagttttaaataatatagatgaatgatatttttgttccaataaaaagatgcacacacttgctaactt 267  Q
    |||||||||||||||||| ||||||||| ||||||||| | |||||||||||   |||||||||||||||    
T  17606161 tattagttttaaataataaagatgaatggtatttttgtccaaataaaaagat--tcacacttgctaactt 17606228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 14188514 - 14188562
Alignment:
Q  198 tattagttttaaataatatagatgaatgatatttttgttccaataaaaa 246  Q
    |||||||||||||||||| ||||||||||||||||||| | ||||||||    
T  14188514 tattagttttaaataataaagatgaatgatatttttgtccaaataaaaa 14188562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 14485534 - 14485497
Alignment:
Q  198 tattagttttaaataatatagatgaatgatatttttgt 235  Q
    |||||||||||||||||| |||||||||||||||||||    
T  14485534 tattagttttaaataataaagatgaatgatatttttgt 14485497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 18297430 - 18297382
Alignment:
Q  198 tattagttttaaataatatagatgaatgatatttttgttccaataaaaa 246  Q
    |||||||||||||||||| |||||||  |||||||||| | ||||||||    
T  18297430 tattagttttaaataataaagatgaaaaatatttttgtccaaataaaaa 18297382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 272
Target Start/End: Complemental strand, 49785946 - 49785829
Alignment:
Q  155 ttaacaaatattttataat-aaaattattaaagtaaaccccatgt-attagttttaaataatatagatgaatgatatttttgttccaataaaaagatgca 252  Q
    ||||||||||||||||||| ||||||| |||| ||| |  || || |||| |||||||||||| ||||||||||||||||||| | | | ||||| ||      
T  49785946 ttaacaaatattttataatgaaaattactaaattaaccttcacgttattaattttaaataataaagatgaatgatatttttgtccaattgaaaaggtg-- 49785849  T
Q  253 cacacttgctaacttagacc 272  Q
    |||| |||||||||||||||    
T  49785848 cacatttgctaacttagacc 49785829  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 55273466 - 55273511
Alignment:
Q  145 ttggtgcaatttaacaaatattttataat-aaaattattaaagtaa 189  Q
    ||||||||| ||||||||||||||||||| ||||||| ||||||||    
T  55273466 ttggtgcaacttaacaaatattttataataaaaattactaaagtaa 55273511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 235
Target Start/End: Original strand, 94447 - 94535
Alignment:
Q  149 tgcaatttaacaaatattttataat-aaaattattaaagtaaaccccatg-tattagttttaaataatatagatgaatgatatttttgt 235  Q
    ||||| ||||||||||| || |||| ||||||||||||||||  | ||   |||||||||||||||||| ||||||| |||||||||||    
T  94447 tgcaagttaacaaatatgttttaatgaaaattattaaagtaactctcaaactattagttttaaataataaagatgaaggatatttttgt 94535  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 246
Target Start/End: Original strand, 19986837 - 19986910
Alignment:
Q  174 aaaattattaaagtaaaccccatg-tattagttttaaataatatagatgaatgatatttttgttccaataaaaa 246  Q
    ||||||||||| |||| || || | ||||||||||||||||||  |||||||| ||||||||| | ||||||||    
T  19986837 aaaattattaatgtaaccctcaagctattagttttaaataataatgatgaatgttatttttgtccaaataaaaa 19986910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 12176382 - 12176298
Alignment:
Q  163 tattttataataaaattattaaagtaaacccca-tgtattagttttaaataatatagatgaatgatatttttgttccaataaaaa 246  Q
    |||||||||||||| |||  ||||||| || || |||| ||||||||||||||| || |||||||  ||||||| | ||||||||    
T  12176382 tattttataataaagttacaaaagtaaccctcaatgtaatagttttaaataataaaggtgaatgacttttttgtccaaataaaaa 12176298  T

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