View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18748_high_15 (Length: 222)
Name: NF18748_high_15
Description: NF18748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18748_high_15 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 33257211 - 33257008
Alignment:
| Q |
19 |
tcagtgaaaccaatttaagatcaatgtaatgaaaagaaaattgcaaagtgtaacaatcgataatcattgacacaatatacaatttttaaagtaaaagaaa |
118 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33257211 |
tcagcgaaaccaatttaagatcaatgtaatgaaaagaaaattgcaaagtggaacaatcgataatcattgacacaatatacaatttttaaagtaaaagaaa |
33257112 |
T |
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| Q |
119 |
tatcatctcaatcgagttgaattacctcaaaattaaacatgtcttggctaaatatgagacgtgacgaagctgaccctgtaaatgacccaaagaggacaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33257111 |
tatcatctcaatcgagttgaattacctcaaaattaaacatgtcttggctaaatatgagacgtgacgaagctgaccctgtaaatgacccaaagaggacaaa |
33257012 |
T |
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| Q |
219 |
gtat |
222 |
Q |
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|||| |
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| T |
33257011 |
gtat |
33257008 |
T |
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