View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18748_high_6 (Length: 475)
Name: NF18748_high_6
Description: NF18748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18748_high_6 |
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| [»] scaffold0118 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 467
Target Start/End: Original strand, 13715604 - 13716051
Alignment:
| Q |
18 |
ttattcgtaactggtcattagttagaagcttatgatgagccaatctccaaacaaatgaaggcccgannnnnnnnnnnnnnnnatgtggggggtggggaca |
117 |
Q |
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| T |
13715604 |
ttattcgtaactggtcatcagttagaagcttttgatgagccaatctttaaacaaatgaaggcccgagtgtgtgtgtgtgt--atgtggggggtggggaca |
13715701 |
T |
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| Q |
118 |
aaggcatttcaaataaacttgcaccaactcaacttgattcgtattcagaaaatcataagctaacttgttggacaaatccccatccatagagtgaagccaa |
217 |
Q |
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| T |
13715702 |
aaggcattccaaataaacttgcaccaactcaacttgattcgtattcagaaaatcataagctaacttgttagacaaatccccatccatagagtgaagccaa |
13715801 |
T |
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| Q |
218 |
tgcaaacagtcattttgaggttcaatgcaaagagtcgtattttgtatcagcaccgtcaaagtaggatatttacggctaatgtatgagggaatctgccatt |
317 |
Q |
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| T |
13715802 |
tgcaaacagtcattttgaggttcaatgcaaagagtggtattttgtatcagcaccgtcaaagtaggatatttagggctaatgtatgagggaatctgccatt |
13715901 |
T |
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| Q |
318 |
gttggtgcacaatgtaatatgacaccttcatgttcagctaagcatgcaaatgagtaggaatgcttagagactgcaccaatggctcaccgggccacatgtc |
417 |
Q |
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| T |
13715902 |
gttggtgcacgatgtaatatgacaccttcatgttcagctaagcatgcaaatgagtaggaatgcttagagacttcaccaatggctcaccgggccacatgtg |
13716001 |
T |
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| Q |
418 |
cttccaaaagagaacattctccacattccctatgttccaattagaattat |
467 |
Q |
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| T |
13716002 |
cttccaaaagagaacattctccacattccctatgttccaattagaattat |
13716051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0118 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 247 - 466
Target Start/End: Original strand, 36099 - 36318
Alignment:
| Q |
247 |
aagagtcgtattttgtatcagcaccgtcaaagtaggatatttacggctaatgtatgagggaatctgccattgttggtgcacaatgtaatatgacaccttc |
346 |
Q |
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|||||| |||||||||||| | |||||||| |||||||||||| |||||||| | ||||||| ||||||| ||||||| |||||||| |||||||||| |
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| T |
36099 |
aagagtggtattttgtatctgaaccgtcaaggtaggatatttagaactaatgtaggtgggaatccgccattgatggtgcagaatgtaatctgacaccttc |
36198 |
T |
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| Q |
347 |
atgttcagctaagcatgcaaatgagtaggaatgcttagagactgcaccaatggctcaccgggccacatgtccttccaaaagagaacattctccacattcc |
446 |
Q |
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| T |
36199 |
atgtccagctgagcatgaaaatgtgaaggaatgctgagagactgcaccaacggctcacccaaccacctgtccttccaaaagagaacattctccccattcc |
36298 |
T |
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| Q |
447 |
ctatgttccaattagaatta |
466 |
Q |
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| T |
36299 |
caatattccaagtagaatta |
36318 |
T |
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