View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18748_low_12 (Length: 340)
Name: NF18748_low_12
Description: NF18748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18748_low_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 32096002 - 32096341
Alignment:
| Q |
1 |
tgagatggacatcatcattctggttttggcaaagtcaccgttgatccaaatatatatttggattaacaataagtttgacagaatcacactataccactat |
100 |
Q |
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| T |
32096002 |
tgagattgacataatcattctgattttggcaaattcaccgttgattcaaacatatatttggattaacaataagtttgacagaatcacactgtaccactat |
32096101 |
T |
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| Q |
101 |
tgttttgtcaaaaatcactctttaaaactttaagaaaatcacgatatcactgtgattttatcaaactcatcgtcaatttcaatcatgcactaaatgttgt |
200 |
Q |
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||||||| ||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32096102 |
tgttttgccaaaaattactctttaaaactttaaaaaaattacgatatcactgtgattttatcaaactcatcgtcaatttcaatcatgcactaaatgttgt |
32096201 |
T |
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| Q |
201 |
gaggtataatttggttaagtgctctcttaacttcaacaatactaactttcttcccatttccaccattttccttcaccttagccctcaactccgcaacaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32096202 |
gaggtataatttggttaagtgctctcttaacttccacaatactaactttcttcccatttccaccattttccttcaccttagccctcaactccgcaacaaa |
32096301 |
T |
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| Q |
301 |
aacaccattattaagcgaagattgaactccaataacctca |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
32096302 |
aacaccattattaagcgaagattgaactccaataacctca |
32096341 |
T |
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