View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18748_low_13 (Length: 323)
Name: NF18748_low_13
Description: NF18748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18748_low_13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 16 - 323
Target Start/End: Complemental strand, 55505952 - 55505655
Alignment:
| Q |
16 |
attaatgatagaactagactaatagcccaaagaatgtatataagtaattaatctattttcactctctattattctctacaagaaagatcaaagatggaac |
115 |
Q |
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| T |
55505952 |
attaatgatagaactagactaatagcccaaagaatgtatataagtaattaatctatttttactctcta----------caagaaagatcaaagatggaac |
55505863 |
T |
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| Q |
116 |
ggagaaaacttggatcctcccattttctttagcaacaagacattgtaacattcaaagagagtaagacatgattttaaaacccttgcactagaaatgatga |
215 |
Q |
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| T |
55505862 |
ggagaaaacttggatcctcccattttctttagcaacaagacattgtaacattcaaagagagtaagacatgattttaaaacccttgcactagaaatgatga |
55505763 |
T |
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| Q |
216 |
atccaagtacagtagaacatgtagttttgtctccaaacatgataccttcatctccccacaaggaaaaggagaggatctgaaccctcataatttatggatt |
315 |
Q |
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| T |
55505762 |
atccaagtacactagaacatgtagttttgtctccaaacatgataccttcatctccccacaaggaaaaggagaggatctgaaccctcataatttatggatt |
55505663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 205 - 319
Target Start/End: Complemental strand, 43996037 - 43995923
Alignment:
| Q |
205 |
agaaatgatgaatccaagtacagtagaacatgtagttttgtctccaaacatgataccttcatctccccacaaggaaaaggagaggatctgaaccctcata |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43996037 |
agaaatgatgaatccaagtacagtagaacatgtagttttgtctccaaacatgataccttcatctccccacaaggaaaaggagaggatccaaaccctcata |
43995938 |
T |
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| Q |
305 |
atttatggattatca |
319 |
Q |
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| T |
43995937 |
atctatggattatca |
43995923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 205 - 276
Target Start/End: Original strand, 43633890 - 43633961
Alignment:
| Q |
205 |
agaaatgatgaatccaagtacagtagaacatgtagttttgtctccaaacatgataccttcatctccccacaa |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43633890 |
agaaatgatgaatccaagtacagtagaacatgtagttttgtctccaaacatgataccttcatctccccacaa |
43633961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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