View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18748_low_18 (Length: 227)

Name: NF18748_low_18
Description: NF18748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18748_low_18
NF18748_low_18
[»] chr5 (17 HSPs)
chr5 (2-157)||(2343633-2343795)
chr5 (2-157)||(12745586-12745734)
chr5 (2-157)||(12808670-12808818)
chr5 (173-227)||(17705434-17705488)
chr5 (174-227)||(25537014-25537067)
chr5 (176-227)||(17822159-17822210)
chr5 (176-227)||(34450024-34450075)
chr5 (173-227)||(9666196-9666250)
chr5 (173-227)||(27175205-27175259)
chr5 (173-227)||(42522697-42522751)
chr5 (173-222)||(835655-835704)
chr5 (173-206)||(5730314-5730347)
chr5 (173-226)||(17555092-17555145)
chr5 (173-214)||(19840369-19840410)
chr5 (173-214)||(39850436-39850477)
chr5 (173-225)||(13998603-13998655)
chr5 (5-157)||(18553184-18553336)
[»] chr3 (12 HSPs)
chr3 (11-150)||(7806820-7806959)
chr3 (174-227)||(19226141-19226194)
chr3 (173-227)||(37681383-37681437)
chr3 (173-220)||(17583245-17583292)
chr3 (173-227)||(5846286-5846340)
chr3 (173-223)||(25441573-25441623)
chr3 (176-226)||(42618143-42618193)
chr3 (173-223)||(46530264-46530314)
chr3 (176-225)||(29541705-29541754)
chr3 (173-222)||(49428612-49428661)
chr3 (170-226)||(28170635-28170691)
chr3 (135-163)||(44354663-44354691)
[»] chr8 (9 HSPs)
chr8 (2-180)||(11869782-11869960)
chr8 (112-161)||(14050788-14050837)
chr8 (173-224)||(30567791-30567842)
chr8 (173-217)||(4205146-4205190)
chr8 (175-227)||(9184054-9184106)
chr8 (173-221)||(23038523-23038571)
chr8 (173-227)||(2442280-2442334)
chr8 (138-180)||(13173496-13173538)
chr8 (112-157)||(33401997-33402042)
[»] chr2 (12 HSPs)
chr2 (5-161)||(28356957-28357113)
chr2 (173-227)||(31054318-31054372)
chr2 (175-227)||(32217110-32217162)
chr2 (173-227)||(32226413-32226467)
chr2 (173-227)||(34118933-34118987)
chr2 (173-220)||(40303010-40303057)
chr2 (176-227)||(44856879-44856930)
chr2 (173-227)||(31522806-31522860)
chr2 (173-227)||(31525293-31525347)
chr2 (173-218)||(12211365-12211410)
chr2 (174-227)||(35468761-35468814)
chr2 (176-213)||(41554840-41554877)
[»] chr7 (14 HSPs)
chr7 (2-150)||(39765686-39765834)
chr7 (174-227)||(2475453-2475506)
chr7 (173-227)||(9059289-9059343)
chr7 (182-223)||(13703051-13703092)
chr7 (173-227)||(5789260-5789314)
chr7 (173-227)||(13640962-13641016)
chr7 (173-227)||(13703343-13703397)
chr7 (173-227)||(14624000-14624054)
chr7 (177-227)||(42851108-42851158)
chr7 (173-227)||(47437782-47437836)
chr7 (182-223)||(13640670-13640711)
chr7 (173-206)||(35338389-35338422)
chr7 (176-220)||(29285609-29285653)
chr7 (178-226)||(43908392-43908440)
[»] chr1 (9 HSPs)
chr1 (173-227)||(33129449-33129503)
chr1 (48-157)||(28980199-28980307)
chr1 (173-227)||(50942338-50942395)
chr1 (173-227)||(11067071-11067125)
chr1 (173-227)||(44717341-44717395)
chr1 (135-180)||(12216746-12216790)
chr1 (135-163)||(3603512-3603540)
chr1 (175-227)||(11461930-11461982)
chr1 (170-198)||(49222640-49222668)
[»] scaffold0025 (1 HSPs)
scaffold0025 (173-227)||(11705-11759)
[»] scaffold0003 (1 HSPs)
scaffold0003 (173-227)||(226374-226428)
[»] chr6 (9 HSPs)
chr6 (177-227)||(30985054-30985104)
chr6 (177-227)||(30991218-30991268)
chr6 (173-222)||(17321915-17321964)
chr6 (174-227)||(32937799-32937852)
chr6 (175-227)||(15926160-15926212)
chr6 (172-223)||(16436901-16436952)
chr6 (173-227)||(8866847-8866901)
chr6 (173-217)||(20469562-20469606)
chr6 (170-198)||(34806426-34806454)
[»] chr4 (10 HSPs)
chr4 (8-142)||(32931289-32931423)
chr4 (173-227)||(38004439-38004493)
chr4 (175-218)||(17616850-17616893)
chr4 (173-227)||(24916054-24916108)
chr4 (173-227)||(53354095-53354149)
chr4 (178-227)||(23403977-23404026)
chr4 (173-218)||(26492404-26492449)
chr4 (182-227)||(55109918-55109963)
chr4 (175-227)||(24535302-24535354)
chr4 (175-227)||(33997705-33997757)
[»] scaffold0018 (1 HSPs)
scaffold0018 (173-227)||(36827-36881)
[»] scaffold0636 (1 HSPs)
scaffold0636 (176-221)||(3311-3356)


Alignment Details
Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 2 - 157
Target Start/End: Complemental strand, 2343795 - 2343633
Alignment:
Q  2 tcacaattcacaaactctcgggtggatttcaacagacgataagcagatgtggtagctcatgctttagttgaagaagtt-------gtgttaacagttaat 94  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||| ||       |||||||| ||||||    
T  2343795 tcacaattcacaaactctcgggtggagttcaacagacgataagcagatgtggtagctcatgctttagccgaagaaattgtgttaagtgttaacggttaat 2343696  T
Q  95 ctcaatatttatttcattatccatcattgtattactgatattattattaatgaaatgttataa 157  Q
    | ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2343695 cccaacatttattttattatccatcattgtattactgatattattattaatgaaatgttataa 2343633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 157
Target Start/End: Complemental strand, 12745734 - 12745586
Alignment:
Q  2 tcacaattcacaaactctcgggtggatttcaacagacgataagcagatgtggtagctcatgctttagttgaagaagttgtgttaacagttaatctcaata 101  Q
    |||||||||||||||| | || || | |||||||  ||| || || ||| ||||||||||| ||||| |||| ||| ||||||| ||| || | ||||||    
T  12745734 tcacaattcacaaactataggatgaagttcaacaagcgaaaaacaaatgcggtagctcatgatttagctgaaaaagatgtgttatcagctagtgtcaata 12745635  T
Q  102 tttatttcattatccatcattgtattactgatattattattaatgaaatgttataa 157  Q
    |||||||       ||| ||||||||| ||||||||||||||||||||||||||||    
T  12745634 tttatttt------cat-attgtattagtgatattattattaatgaaatgttataa 12745586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 157
Target Start/End: Complemental strand, 12808818 - 12808670
Alignment:
Q  2 tcacaattcacaaactctcgggtggatttcaacagacgataagcagatgtggtagctcatgctttagttgaagaagttgtgttaacagttaatctcaata 101  Q
    |||||||||||||||| | || || | |||||||  ||| || || ||| ||||| ||||| ||||| |||| ||| ||||||| ||| |||| ||||||    
T  12808818 tcacaattcacaaactataggatgaagttcaacaagcgaaaaacaaatgcggtagttcatgatttagctgaaaaagatgtgttatcagctaatgtcaata 12808719  T
Q  102 tttatttcattatccatcattgtattactgatattattattaatgaaatgttataa 157  Q
    |||||||       ||| ||||||||| ||||||||||||||||||||||||||||    
T  12808718 tttatttt------cat-attgtattagtgatattattattaatgaaatgttataa 12808670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 17705434 - 17705488
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    ||||||||||||| |||||||||||| ||| |||||||||| |||| ||||||||    
T  17705434 ttaaaaaagataaaaatttatattatatttgttaaattattcttgttattgaaaa 17705488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 25537014 - 25537067
Alignment:
Q  174 taaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    ||||||||||||||||||| ||||| ||| ||||||||||||||| | ||||||    
T  25537014 taaaaaagataagaatttacattatatttgttaaattattgttgttactgaaaa 25537067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 17822210 - 17822159
Alignment:
Q  176 aaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    |||||||||||||||| | |||| ||| ||| ||||||||||||||||||||    
T  17822210 aaaaagataagaatttttgttatatttgttatattattgttgtcattgaaaa 17822159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 34450075 - 34450024
Alignment:
Q  176 aaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    ||||||||||||||||| ||| | ||| ||| ||||||||||||||||||||    
T  34450075 aaaaagataagaatttaaattttatttgttatattattgttgtcattgaaaa 34450024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 9666196 - 9666250
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    ||||||||||||||||||| | |||  ||| ||| ||||||||||||||||||||    
T  9666196 ttaaaaaagataagaatttttgttacatttgttatattattgttgtcattgaaaa 9666250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 27175205 - 27175259
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    ||||||||||||||||||| | |||| ||| ||| |||||| |||||||||||||    
T  27175205 ttaaaaaagataagaatttttgttatatttgttatattattattgtcattgaaaa 27175259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 42522751 - 42522697
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    |||||||| |||||||||| |||||| ||| ||| ||||||||||| ||||||||    
T  42522751 ttaaaaaatataagaatttttattatatttgttatattattgttgttattgaaaa 42522697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 835655 - 835704
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcatt 222  Q
    |||||||| |||| |||||||||||| ||| |||||||||| ||||||||    
T  835655 ttaaaaaatataataatttatattatatttgttaaattattattgtcatt 835704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 5730347 - 5730314
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttatta 206  Q
    |||||||||||||||||||||||||| |||||||    
T  5730347 ttaaaaaagataagaatttatattatatttatta 5730314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 17555092 - 17555145
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcattgaaa 226  Q
    ||||||||||||||||||||||| || ||||||| | ||||| | |||||||||    
T  17555092 ttaaaaaagataagaatttatataatatttattatactattgatatcattgaaa 17555145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 19840369 - 19840410
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattg 214  Q
    ||||||||||||||||||| |||||| ||||||| |||||||    
T  19840369 ttaaaaaagataagaatttttattatatttattatattattg 19840410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 39850436 - 39850477
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattg 214  Q
    ||||||| |||||||||||||||||| ||||||| |||||||    
T  39850436 ttaaaaatgataagaatttatattatatttattatattattg 39850477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 13998655 - 13998603
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcattgaa 225  Q
    |||||| |||||| ||||| | |||| ||||||| ||||||||||||||||||    
T  13998655 ttaaaatagataataatttttgttatatttattatattattgttgtcattgaa 13998603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 157
Target Start/End: Original strand, 18553184 - 18553336
Alignment:
Q  5 caattcacaaactctcgggtggatttcaacagacgataagcagatgtggtagctcatgctttagttgaagaagttgtgttaacagttaatctcaatattt 104  Q
    ||||| |||||||||| |||||| |||||||| | | ||||| ||| |||  |||||||| |||| | |||||| |  ||| ||| || ||||  |||||    
T  18553184 caattaacaaactctcaggtggagttcaacaggcaacaagcaaatgaggtgactcatgctctagtaggagaagtcgcattatcagctagtctcgttattt 18553283  T
Q  105 atttcattatccatcattgtattactgatattattattaatgaaatgttataa 157  Q
    ||||   ||||| | |||||||||  || ||||||||||| |||||| |||||    
T  18553284 attttcatatccctgattgtattaacgacattattattaaggaaatgctataa 18553336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 7806820 - 7806959
Alignment:
Q  11 acaaactctcgggtggatttcaacagacgataagcagatgtggtagctcatgctttagttgaagaagttgtgttaacagttaatctcaatatttatttca 110  Q
    |||||||||| |||||| ||||||| |  | || || | |||||||||||||||||||||| |||||| ||||||  || ||||| || |||||||||      
T  7806820 acaaactctcaggtggagttcaacaaataacaaacaaaggtggtagctcatgctttagttggagaagtcgtgttataagctaatcccactatttattttc 7806919  T
Q  111 ttatccatcattgtattactgatattattattaatgaaat 150  Q
     ||||| |||||||||||||||||||||||||||||||||    
T  7806920 atatccctcattgtattactgatattattattaatgaaat 7806959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 19226141 - 19226194
Alignment:
Q  174 taaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    |||||||||||| |||||||||||| ||| ||||||||||||||||||||||||    
T  19226141 taaaaaagataaaaatttatattatatttgttaaattattgttgtcattgaaaa 19226194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 37681383 - 37681437
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    |||||||||||||| ||||||||||| ||| ||||||||||||||| ||||||||    
T  37681383 ttaaaaaagataaggatttatattatatttgttaaattattgttgttattgaaaa 37681437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 17583245 - 17583292
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtca 220  Q
    ||||||||||||||||||| |||||| ||| ||| |||||||||||||    
T  17583245 ttaaaaaagataagaatttttattatatttgttatattattgttgtca 17583292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 5846286 - 5846340
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    |||||||||||||  ||||||||||| ||| ||||||||||||| | ||||||||    
T  5846286 ttaaaaaagataaagatttatattatatttgttaaattattgtttttattgaaaa 5846340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 25441623 - 25441573
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcattg 223  Q
    ||||||||||||| |||||||||||| ||| |||||||| | |||||||||    
T  25441623 ttaaaaaagataataatttatattatatttgttaaattactattgtcattg 25441573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 42618143 - 42618193
Alignment:
Q  176 aaaaagataagaatttatattatctttattaaattattgttgtcattgaaa 226  Q
    ||||||||||||||||||||||| ||| ||| ||| ||| |||||||||||    
T  42618143 aaaaagataagaatttatattatatttgttacattgttggtgtcattgaaa 42618193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 46530264 - 46530314
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcattg 223  Q
    ||||||||| |||||| || |||||| ||||||| ||||||||||||||||    
T  46530264 ttaaaaaagttaagaacttttattatatttattacattattgttgtcattg 46530314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 29541754 - 29541705
Alignment:
Q  176 aaaaagataagaatttatattatctttattaaattattgttgtcattgaa 225  Q
    |||||||||||||||| | |||| ||| ||| ||||||||||||||||||    
T  29541754 aaaaagataagaatttttgttatgtttgttatattattgttgtcattgaa 29541705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 49428612 - 49428661
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcatt 222  Q
    ||||||||||||||||||| | |||| ||| ||| |||||||||||||||    
T  49428612 ttaaaaaagataagaatttttcttatatttgttatattattgttgtcatt 49428661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 28170635 - 28170691
Alignment:
Q  170 tctttaaaaaagataagaatttatattatctttattaaattattgttgtcattgaaa 226  Q
    ||||| ||||||||||||||||||||||| ||| ||| ||| ||| |||||| ||||    
T  28170635 tcttttaaaaagataagaatttatattatatttgttacattgttggtgtcatcgaaa 28170691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 163
Target Start/End: Original strand, 44354663 - 44354691
Alignment:
Q  135 ttattattaatgaaatgttataaacatat 163  Q
    |||||||||||||||||||||||||||||    
T  44354663 ttattattaatgaaatgttataaacatat 44354691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 180
Target Start/End: Original strand, 11869782 - 11869960
Alignment:
Q  2 tcacaattcacaaactctcgggtggatttcaacagacgataagcagatgtggtagctcatgctttagttgaagaagttgtgttaacagttaatctcaata 101  Q
    ||||| ||| ||||||||||| |||| |||||||| |||||| || |||  |||||||||| |||||||| |||||  |||||| ||  || ||||| ||    
T  11869782 tcacagttcgcaaactctcggttggagttcaacaggcgataaacaaatgcagtagctcatgttttagttggagaagccgtgttatcaactagtctcacta 11869881  T
Q  102 tttatttcattatccatcattgtattactgatattattattaatgaaatgttataaacatatcttttttctttaaaaaa 180  Q
    |||||||   |||||  ||||||| ||||||||||||||||||| ||||| ||||||||| |||| ||||  |||||||    
T  11869882 tttattttcatatcccgcattgtactactgatattattattaataaaatgctataaacatctcttctttcaataaaaaa 11869960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 14050837 - 14050788
Alignment:
Q  112 tatccatcattgtattactgatattattattaatgaaatgttataaacat 161  Q
    ||||| |||| ||||||||||||||||||||||||||||| |||||||||    
T  14050837 tatccctcatggtattactgatattattattaatgaaatgctataaacat 14050788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 30567842 - 30567791
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcattga 224  Q
    ||||||||||||| |||||||||||| ||| ||||||||||||||| |||||    
T  30567842 ttaaaaaagataataatttatattatatttgttaaattattgttgttattga 30567791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 4205190 - 4205146
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttg 217  Q
    |||||||||||| ||||||||||||| ||| ||||||||||||||    
T  4205190 ttaaaaaagataggaatttatattatatttgttaaattattgttg 4205146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 9184106 - 9184054
Alignment:
Q  175 aaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    ||||||||| | |||||||||||| ||||||||| |||||||| |||||||||    
T  9184106 aaaaaagatgaaaatttatattatatttattaaaatattgttgccattgaaaa 9184054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 23038523 - 23038571
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcat 221  Q
    ||||||||| |||||||||||||||| ||| | ||||||||||||||||    
T  23038523 ttaaaaaaggtaagaatttatattatatttgtcaaattattgttgtcat 23038571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 2442280 - 2442334
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    ||||||||||||| |||||||||||| ||| ||| ||||||| | ||||||||||    
T  2442280 ttaaaaaagataaaaatttatattatatttgttatattattggtttcattgaaaa 2442334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 13173496 - 13173538
Alignment:
Q  138 ttattaatgaaatgttataaacatatcttttttctttaaaaaa 180  Q
    ||||||||||||||||||||||||||   ||||||||||||||    
T  13173496 ttattaatgaaatgttataaacatattccttttctttaaaaaa 13173538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 157
Target Start/End: Complemental strand, 33402042 - 33401997
Alignment:
Q  112 tatccatcattgtattactgatattattattaatgaaatgttataa 157  Q
    ||||| ||||| ||||| ||||||||||| ||||||||||||||||    
T  33402042 tatccctcattatattaatgatattattagtaatgaaatgttataa 33401997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 5 - 161
Target Start/End: Original strand, 28356957 - 28357113
Alignment:
Q  5 caattcacaaactctcgggtggatttcaacagacgataagcagatgtggtagctcatgctttagttgaagaagttgtgttaacagttaatctcaatattt 104  Q
    ||||||||| ||||| ||||||| |||||||  ||| ||||| |||  ||||||||||| || | || |||||| |||||| | | || || ||||||||    
T  28356957 caattcacagactctagggtggagttcaacatgcgacaagcaaatgcagtagctcatgcattggctggagaagtcgtgttatcggctagtcccaatattt 28357056  T
Q  105 atttcattatccatcattgtattactgatattattattaatgaaatgttataaacat 161  Q
    ||||   ||||| || |||||||| |||||||||||||||||||||| |||||||||    
T  28357057 attttcatatccgtcgttgtattaatgatattattattaatgaaatgatataaacat 28357113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 31054318 - 31054372
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||    
T  31054318 ttaaaaaagataagaatttatattatatttgttaaattattgttgtcattaaaaa 31054372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 32217162 - 32217110
Alignment:
Q  175 aaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    |||||||||||||||||| ||||| ||||||| ||| ||||||||||||||||    
T  32217162 aaaaaagataagaatttagattatatttattatatttttgttgtcattgaaaa 32217110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 32226467 - 32226413
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    |||||||| ||||||||||| ||||| ||||||| ||| ||||||||||||||||    
T  32226467 ttaaaaaaaataagaatttagattatatttattatatttttgttgtcattgaaaa 32226413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 34118987 - 34118933
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    |||||||| ||||| ||||||||||| |||||||||||| | |||||||||||||    
T  34118987 ttaaaaaatataaggatttatattatatttattaaattactattgtcattgaaaa 34118933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 40303057 - 40303010
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtca 220  Q
    ||||||||||||||||||| |||||| ||| ||| |||||||||||||    
T  40303057 ttaaaaaagataagaatttttattatatttgttatattattgttgtca 40303010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 44856930 - 44856879
Alignment:
Q  176 aaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    |||||||||||||||| | |||| ||| ||| ||||||||||||||||||||    
T  44856930 aaaaagataagaatttttgttatatttgttatattattgttgtcattgaaaa 44856879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 31522806 - 31522860
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    ||||||||||| || ||||||||||| ||| |||| |||||||||| ||||||||    
T  31522806 ttaaaaaagattaggatttatattatatttgttaacttattgttgttattgaaaa 31522860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 31525293 - 31525347
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    |||||||||||||| ||||||||||| ||| |||| ||||||||||  |||||||    
T  31525293 ttaaaaaagataaggatttatattatatttgttaacttattgttgtttttgaaaa 31525347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 12211365 - 12211410
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgt 218  Q
    ||||||||||||| ||| |||||||| ||| |||||||||||||||    
T  12211365 ttaaaaaagataaaaatctatattatatttgttaaattattgttgt 12211410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 35468761 - 35468814
Alignment:
Q  174 taaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    ||||||| ||||||||||||||||| ||||||| ||| ||| | ||||||||||    
T  35468761 taaaaaatataagaatttatattatatttattatattgttgatatcattgaaaa 35468814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 41554877 - 41554840
Alignment:
Q  176 aaaaagataagaatttatattatctttattaaattatt 213  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  41554877 aaaaagataagaatttttattatatttattaaattatt 41554840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 150
Target Start/End: Complemental strand, 39765834 - 39765686
Alignment:
Q  2 tcacaattcacaaactctcgggtggatttcaacagacgataagcagatgtggtagctcatgctttagttgaagaagttgtgttaacagttaatctcaata 101  Q
    ||||| ||||||||||||||| |  | ||||||| |||| || |||||||||||||||||||||||  || |||||  |||||| ||  ||||  |||||    
T  39765834 tcacagttcacaaactctcggattaagttcaacatacgacaaacagatgtggtagctcatgctttaaatggagaagccgtgttatcaactaattccaata 39765735  T
Q  102 tttatttcattatccatcattgtattactgatattattattaatgaaat 150  Q
    |||||||   ||||| || ||||| |  |||||||||||||||||||||    
T  39765734 tttattttcatatccgtcgttgtaatgttgatattattattaatgaaat 39765686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 2475453 - 2475506
Alignment:
Q  174 taaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    |||||||||||||||||| |||||| ||||||| |||||||||||| |||||||    
T  2475453 taaaaaagataagaatttttattatatttattacattattgttgtcgttgaaaa 2475506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 9059343 - 9059289
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    |||||||||||||  ||||||||||| |||||||||||| |||||| ||||||||    
T  9059343 ttaaaaaagataaagatttatattatatttattaaattactgttgttattgaaaa 9059289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 13703051 - 13703092
Alignment:
Q  182 ataagaatttatattatctttattaaattattgttgtcattg 223  Q
    ||||||||||||||||| ||| ||||||||||||||||||||    
T  13703051 ataagaatttatattatatttgttaaattattgttgtcattg 13703092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 5789260 - 5789314
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    ||||||||||||   ||||||||||| ||| ||||||||||||||| ||||||||    
T  5789260 ttaaaaaagatacagatttatattatatttgttaaattattgttgttattgaaaa 5789314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 13640962 - 13641016
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    ||||||||||| | ||||| |||||| ||| ||| ||||||||||||||||||||    
T  13640962 ttaaaaaagatgataatttttattatatttgttatattattgttgtcattgaaaa 13641016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 13703343 - 13703397
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    ||||||||||| | ||||| |||||| ||| ||| ||||||||||||||||||||    
T  13703343 ttaaaaaagatgataatttttattatatttgttatattattgttgtcattgaaaa 13703397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 14624054 - 14624000
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    ||||||||||||| |||||||||||| ||| |||||||| | |||| ||||||||    
T  14624054 ttaaaaaagataaaaatttatattatatttgttaaattactcttgttattgaaaa 14624000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 42851158 - 42851108
Alignment:
Q  177 aaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    ||||||||||||||| |||||| ||| ||| |||||||||| |||||||||    
T  42851158 aaaagataagaatttttattatatttgttatattattgttgccattgaaaa 42851108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 47437836 - 47437782
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    |||||||||||||||||||||||||| ||| ||| ||| ||| | ||||||||||    
T  47437836 ttaaaaaagataagaatttatattatattttttatattgttgatatcattgaaaa 47437782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 13640670 - 13640711
Alignment:
Q  182 ataagaatttatattatctttattaaattattgttgtcattg 223  Q
    ||||||||||||||||| ||| ||||||||||||||| ||||    
T  13640670 ataagaatttatattatatttgttaaattattgttgttattg 13640711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 35338389 - 35338422
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttatta 206  Q
    |||||||||||||||||||||||||| |||||||    
T  35338389 ttaaaaaagataagaatttatattatatttatta 35338422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 29285609 - 29285653
Alignment:
Q  176 aaaaagataagaatttatattatctttattaaattattgttgtca 220  Q
    ||||| ||||||||||||||||| ||| ||||||| |||||||||    
T  29285609 aaaaacataagaatttatattatatttgttaaattgttgttgtca 29285653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 43908440 - 43908392
Alignment:
Q  178 aaagataagaatttatattatctttattaaattattgttgtcattgaaa 226  Q
    |||||||| ||||| |||||| ||||||  |||||||||||||||||||    
T  43908440 aaagataataatttttattatatttattgtattattgttgtcattgaaa 43908392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 33129449 - 33129503
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    ||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||    
T  33129449 ttaaaaaagatgagaatttatattatatttgttaaattattgttgtcattgaaaa 33129503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 157
Target Start/End: Complemental strand, 28980307 - 28980199
Alignment:
Q  48 atgtggtagctcatgctttagttgaagaagttgtgttaacagttaatctcaatatttatttcattatccatcattgtattactgatattattattaatga 147  Q
    ||||| ||||||||||||| |||| |||||| |||||| || ||| |  ||||||||||||   ||||| || || ||||||||||||||||| ||||||    
T  28980307 atgtgatagctcatgctttggttggagaagtcgtgttatcaattagttccaatatttatttttatatccttcgttctattactgatattatta-taatga 28980209  T
Q  148 aatgttataa 157  Q
    ||||||||||    
T  28980208 aatgttataa 28980199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 50942395 - 50942338
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaat---tattgttgtcattgaaaa 227  Q
    |||||||||||||||||||||||||| ||| ||||||   |||||| |||||||||||    
T  50942395 ttaaaaaagataagaatttatattatttttgttaaattactattgtcgtcattgaaaa 50942338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 11067125 - 11067071
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    ||||||||||||||||||| | |||| ||| ||| |||||| |||||||||||||    
T  11067125 ttaaaaaagataagaatttttgttatattttttatattattattgtcattgaaaa 11067071  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 44717395 - 44717341
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    ||||||||||||||||||| |||| | ||| ||| ||||||||||||||| ||||    
T  44717395 ttaaaaaagataagaatttttattttatttgttatattattgttgtcattaaaaa 44717341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 12216790 - 12216746
Alignment:
Q  135 ttattattaatgaaatgttataaacatatcttttttctttaaaaaa 180  Q
    ||||||||||||||||||||||||||||| | |||||||| |||||    
T  12216790 ttattattaatgaaatgttataaacatat-tgttttcttttaaaaa 12216746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 163
Target Start/End: Complemental strand, 3603540 - 3603512
Alignment:
Q  135 ttattattaatgaaatgttataaacatat 163  Q
    |||||||||||||||||||||||||||||    
T  3603540 ttattattaatgaaatgttataaacatat 3603512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 11461982 - 11461930
Alignment:
Q  175 aaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    |||||||||||| |||| |||||| ||| |||||||| |||||| ||||||||    
T  11461982 aaaaaagataaggatttgtattatatttgttaaattactgttgttattgaaaa 11461930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 198
Target Start/End: Complemental strand, 49222668 - 49222640
Alignment:
Q  170 tctttaaaaaagataagaatttatattat 198  Q
    |||||||||||||||||||||||||||||    
T  49222668 tctttaaaaaagataagaatttatattat 49222640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 11705 - 11759
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    ||||||||||||||||||| | |||| ||||||| ||||||||||||||||||||    
T  11705 ttaaaaaagataagaatttttgttatatttattatattattgttgtcattgaaaa 11759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 226428 - 226374
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    |||||||| |||||||||| |||||| ||| ||| ||||||||||||||||||||    
T  226428 ttaaaaaaaataagaatttttattatatttgttacattattgttgtcattgaaaa 226374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 30985054 - 30985104
Alignment:
Q  177 aaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    |||||||||| ||||||||||| ||| ||||||||||||||| ||||||||    
T  30985054 aaaagataaggatttatattatatttgttaaattattgttgttattgaaaa 30985104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 30991218 - 30991268
Alignment:
Q  177 aaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    |||||||||| ||||||||||| ||| ||||||||||||||| ||||||||    
T  30991218 aaaagataaggatttatattatatttgttaaattattgttgttattgaaaa 30991268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 17321915 - 17321964
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcatt 222  Q
    |||||||||||||| ||||||||||| ||| |||||| ||||||||||||    
T  17321915 ttaaaaaagataagtatttatattatatttgttaaataattgttgtcatt 17321964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 32937799 - 32937852
Alignment:
Q  174 taaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    |||||||| |||||||||||||||| ||| ||| ||||||| ||||||||||||    
T  32937799 taaaaaaggtaagaatttatattatatttgttagattattgatgtcattgaaaa 32937852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 15926212 - 15926160
Alignment:
Q  175 aaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    ||||||||||||||||| |||||| ||| ||| |||||| |||||||||||||    
T  15926212 aaaaaagataagaatttttattatatttgttatattattattgtcattgaaaa 15926160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 16436952 - 16436901
Alignment:
Q  172 tttaaaaaagataagaatttatattatctttattaaattattgttgtcattg 223  Q
    ||||||||||||||||||||||||||| |||  || ||||||| ||||||||    
T  16436952 tttaaaaaagataagaatttatattatattttctatattattgatgtcattg 16436901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 8866901 - 8866847
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    |||||||||||||||||||||||||| ||| ||| ||| ||| | ||||||||||    
T  8866901 ttaaaaaagataagaatttatattatatttgttatattgttggtatcattgaaaa 8866847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 20469606 - 20469562
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttg 217  Q
    |||||||||||||| ||||||||||| | |||||||||| |||||    
T  20469606 ttaaaaaagataaggatttatattatttatattaaattactgttg 20469562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 198
Target Start/End: Complemental strand, 34806454 - 34806426
Alignment:
Q  170 tctttaaaaaagataagaatttatattat 198  Q
    |||||||||||||||||||||||||||||    
T  34806454 tctttaaaaaagataagaatttatattat 34806426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 32931289 - 32931423
Alignment:
Q  8 ttcacaaactctcgggtggatttcaacagacgataagcagatgtggtagctcatgctttagttgaagaagttgtgttaacagttaatctcaatatttatt 107  Q
    |||||||||||||||||||| |||||||| ||| ||  | || |||||||||||||||||  || ||||||  ||||| ||  || || |||||||||||    
T  32931289 ttcacaaactctcgggtggagttcaacaggcgacaaataaatatggtagctcatgctttacctggagaagtcatgttatcaactagtcccaatatttatt 32931388  T
Q  108 tcattatccatcattgtattactgatattattatt 142  Q
    |   ||||   |||||||||| |||||||| ||||    
T  32931389 tttatatctcacattgtattattgatattaatatt 32931423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 38004439 - 38004493
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    ||||||||||||||||||| | |||  ||||||| ||||||||||||||||||||    
T  38004439 ttaaaaaagataagaatttttgttaaatttattatattattgttgtcattgaaaa 38004493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 17616893 - 17616850
Alignment:
Q  175 aaaaaagataagaatttatattatctttattaaattattgttgt 218  Q
    |||||||||||| ||||||||||| ||| |||||||||||||||    
T  17616893 aaaaaagataagcatttatattatatttgttaaattattgttgt 17616850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 24916054 - 24916108
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    |||||||||| ||||| ||||||||| ||| ||| ||||||||||| ||||||||    
T  24916054 ttaaaaaagaaaagaaattatattatatttgttatattattgttgttattgaaaa 24916108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 53354149 - 53354095
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    ||||||||||||||||||| | |||| ||| ||| || |||||||||||||||||    
T  53354149 ttaaaaaagataagaatttttgttatatttgttatataattgttgtcattgaaaa 53354095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 23403977 - 23404026
Alignment:
Q  178 aaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    |||||||||| |||||||||| |||  ||||||| |||||||||||||||    
T  23403977 aaagataagagtttatattatatttgataaattactgttgtcattgaaaa 23404026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 26492404 - 26492449
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgt 218  Q
    |||||||||||||| ||||||| ||| ||| |||||||||||||||    
T  26492404 ttaaaaaagataaggatttatactatatttgttaaattattgttgt 26492449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 55109918 - 55109963
Alignment:
Q  182 ataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    ||||||||||||||||| ||||||| ||||||| ||||||| ||||    
T  55109918 ataagaatttatattatatttattatattattgatgtcattaaaaa 55109963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 24535302 - 24535354
Alignment:
Q  175 aaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    |||||| || ||||||| |||||| ||||||| ||||||||||||| ||||||    
T  24535302 aaaaaaaattagaatttttattatatttattacattattgttgtcaatgaaaa 24535354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 33997757 - 33997705
Alignment:
Q  175 aaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    |||||| ||||||||||||||||| ||| ||| ||||||| |||||| |||||    
T  33997757 aaaaaaaataagaatttatattatatttgttatattattgatgtcatcgaaaa 33997705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 36827 - 36881
Alignment:
Q  173 ttaaaaaagataagaatttatattatctttattaaattattgttgtcattgaaaa 227  Q
    ||||||||||||||||||| |||||| ||| ||| ||| ||||||||| ||||||    
T  36827 ttaaaaaagataagaatttttattatatttgttatattgttgttgtcaatgaaaa 36881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0636 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0636
Description:

Target: scaffold0636; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 3356 - 3311
Alignment:
Q  176 aaaaagataagaatttatattatctttattaaattattgttgtcat 221  Q
    ||||||||||||||||||||||  ||  ||||||||||||||||||    
T  3356 aaaaagataagaatttatattagattggttaaattattgttgtcat 3311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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