View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18748_low_2 (Length: 595)
Name: NF18748_low_2
Description: NF18748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18748_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 15 - 588
Target Start/End: Complemental strand, 33434705 - 33434123
Alignment:
| Q |
15 |
gatacaatacaactttagtcgcccatgtggtcccataactattttggttgagtatattactaagagtggtaaatttgacttgattttaaagttgagttaa |
114 |
Q |
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| T |
33434705 |
gatacaatacaactttactcgccgatctggtcccgtaactattt-ggttgagtattttactaggagtggtaaaattgacttgattttaaagttgagttaa |
33434607 |
T |
|
| Q |
115 |
tttgaagtgaattgatttttgcttgaacatttttactttagaagcaagattaatgtaaaggtatagatgtgttaatgcttaatataacacaaaatcaact |
214 |
Q |
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| T |
33434606 |
cttgaagggaattgatttttgcttgaacatttttactttagaagcaagtttaatgtaaaggtatagatgtgttaatgcttaatataacacgaaatcgact |
33434507 |
T |
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| Q |
215 |
aattaaaattattctaatcaaattattgactaaagtttgaagggaaaatcaccgaagagaattgaaactgaagtcttgagaggatcatacttcaaagttt |
314 |
Q |
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| T |
33434506 |
aatttaaaatgttctagtaaaattattgactaaagtttgaagggaaaatcattgaagagaatcgaacatgaggtcttgagaggatcacatttcaaggttc |
33434407 |
T |
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| Q |
315 |
caagccaaaacaatcagaccaactcagatgagtttgaagggaaaaccaattttattaa-nnnnnnnaagcaagtcaattttattcatgaacaaccaaac- |
412 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
33434406 |
taagccaaaacaatcagaccaactcaggtgagaatgaagggaaaaccaattttattaattttttttaagcaaatcaattttattcatgaacaaccaaaca |
33434307 |
T |
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| Q |
413 |
--------aattgcatttctcctataatcgtaacctttattgatgctttctaccaaaaatcaaacacgtatttatacccgtaaggtgtaactaagttaag |
504 |
Q |
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| T |
33434306 |
tttgtattatttgtatttgtcctataatcgtaaccattattgatactttctaccaaaattcaaaaacgtatttatacccgtaaggtgtaactaagttaag |
33434207 |
T |
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| Q |
505 |
aaataaatacaaaatagataaccaaacaagatgaaatgatatattaacataaagggagattttgtttggccggtgcaccctatg |
588 |
Q |
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| T |
33434206 |
aaataaatacgaaatagataaccaaacaagatgaaatgatatattaacataaagggagattttgcttggccggtgcaccctatg |
33434123 |
T |
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