View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18748_low_3 (Length: 555)
Name: NF18748_low_3
Description: NF18748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18748_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 227 - 554
Target Start/End: Complemental strand, 39901986 - 39901659
Alignment:
| Q |
227 |
ctcctaaactgcatgactaagcattaatatcatgcacattgtcttgctgcactgtaggacgactcttaattgtttttacctctccaagttttcagctaat |
326 |
Q |
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| T |
39901986 |
ctcctaaactgcatgactaagcattaatatcatgcacattgtcttgctgcactgtaggacgactcttaattgtttttacctctccaagttttcagctaat |
39901887 |
T |
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| Q |
327 |
tcatggaaggatacttaatttctcttttaatttaaactgataaacattagatgctgctcaacctgaaactgccaacactgtggattctttgccaaaacga |
426 |
Q |
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| T |
39901886 |
tcatggcaggatacttaatttctcttttaatttaaactgataaacattagatgctgctcaacctgaaactgccaacactgtggattctttgccaaaacga |
39901787 |
T |
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| Q |
427 |
ttcaaatggacaattgacagattttctcagaaaaatgcgagagagatctattcagatgtatttgaagttggtggctataaatggtattttgcttacacat |
526 |
Q |
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| T |
39901786 |
ttcaaatggacaattgacagattttctcagaaaaatgcgagagagatctattcagatgtatttgaagttggtggctataaatggtattttgcttacacat |
39901687 |
T |
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| Q |
527 |
tccccgaatcaactgatgatgtccatct |
554 |
Q |
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| T |
39901686 |
tccccgaatcaactcatgatgttcatct |
39901659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 39902225 - 39902016
Alignment:
| Q |
19 |
ccttgagacaatatattgatactggtagtgtcaattaagagtcgttctacagtgcagcgagacaatgtgcattatattattttatactggtaatatgtaa |
118 |
Q |
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| T |
39902225 |
ccttgagacaatatgttgatactggtagtgtcaattaagagtcgttctacagtgcagcgagacaatgtgcattatattattttatactggtaatatgtaa |
39902126 |
T |
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| Q |
119 |
ctcaaaggcttacacaatacacgaatatagtgaacgattgagaatacaattatataggtttattttggtatatgaatcaggttcacaaactcattacagt |
218 |
Q |
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| T |
39902125 |
ctcaaaggctt--acaatacacgaatatagtgaacgattgagaatacaattatataggtttattttggtatacgaatcaggttcacaaactcattacagt |
39902028 |
T |
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| Q |
219 |
gacagatactcc |
230 |
Q |
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| T |
39902027 |
gacagatactcc |
39902016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 473 - 538
Target Start/End: Complemental strand, 39913701 - 39913636
Alignment:
| Q |
473 |
tctattcagatgtatttgaagttggtggctataaatggtattttgcttacacattccccgaatcaa |
538 |
Q |
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| T |
39913701 |
tctattcagatgtatttgaagctgggggctataaatggtattgtgcttacacattccctgaatcaa |
39913636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 39901915 - 39901962
Alignment:
| Q |
50 |
caattaagagtcgttctacagtgcagcgagacaatgtgcattatatta |
97 |
Q |
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| T |
39901915 |
caattaagagtcgtcctacagtgcagcaagacaatgtgcatgatatta |
39901962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 251 - 298
Target Start/End: Original strand, 39902147 - 39902194
Alignment:
| Q |
251 |
taatatcatgcacattgtcttgctgcactgtaggacgactcttaattg |
298 |
Q |
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| T |
39902147 |
taatataatgcacattgtctcgctgcactgtagaacgactcttaattg |
39902194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 410
Target Start/End: Complemental strand, 37477029 - 37476959
Alignment:
| Q |
340 |
cttaatttctcttttaatttaaactgataaacattagatgctgctcaacctgaaactgccaacactgtgga |
410 |
Q |
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| T |
37477029 |
cttaattgctcttttcatttatattcatgaacattagtggttgctcaacctgaaactgccaacactgtgga |
37476959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 514
Target Start/End: Complemental strand, 39868266 - 39868225
Alignment:
| Q |
473 |
tctattcagatgtatttgaagttggtggctataaatggtatt |
514 |
Q |
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| T |
39868266 |
tctattcagatgtatttgaagttgggggttacaaatggtatt |
39868225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 513
Target Start/End: Original strand, 39732729 - 39732765
Alignment:
| Q |
477 |
ttcagatgtatttgaagttggtggctataaatggtat |
513 |
Q |
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| T |
39732729 |
ttcagatgtatttgatgttgggggctataaatggtat |
39732765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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