View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18748_low_4 (Length: 525)
Name: NF18748_low_4
Description: NF18748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18748_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 440; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 5 - 516
Target Start/End: Complemental strand, 18358022 - 18357512
Alignment:
| Q |
5 |
cactcacctttaatcttgcttcaaggctcctcatattggaatcagggttagacagtttcctagactccactatagatattgatgagttcaatgcaatgaa |
104 |
Q |
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|||||||||| |||||||||||||||||| ||| |||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
18358022 |
cactcaccttcaatcttgcttcaaggctcatcaaattggaattagggttagacagtttcctagattccactatagacgttgatgagttcaatgcaatgaa |
18357923 |
T |
|
| Q |
105 |
cacaagagcaagagcaacaagaacaaatattttatgagaggaagccattttagtattagaagaaattttttatatttctatatatgatgagtttggattg |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
18357922 |
cacaagagcaagagcaacaagaacaaatattttatgagaggaagccattttagtattagaagaaattttttatatttctatatatgacgagtttggattg |
18357823 |
T |
|
| Q |
205 |
ttatggtgaaacttacttagggtcttatatatatagtagctaactagggggagcaaataattagtaacggtaggttgatgggggagatgaagggtaaaca |
304 |
Q |
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| T |
18357822 |
ttatggtgaaacttacttagggttttatatatatagtagctaactagggagagtaaataattagtaacggtaggttcat-ggggagatgaagggtaaaca |
18357724 |
T |
|
| Q |
305 |
taaatgtgcagtggttacataagaaaagtgtatatgaaagattgaggatgttcatattctctatgatggagatataacagcaataataaccgggttgaat |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| |
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| T |
18357723 |
taaatgtgcagtggttacataagaaaagtgtatatgaaagattgaggatgttcatattctctatgatggagatataacagtaataataactgagttgaat |
18357624 |
T |
|
| Q |
405 |
ttaaatgacaattgattctatagtctatttgtctccattagggcacgatgaacatttgggtaacattctaattcaaaaatctccattttccttgaattaa |
504 |
Q |
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| T |
18357623 |
ttaaatgacaattgattctatagtctatttgtctccattagggcacgatgaacatttgggtaatattctaattcaaaaatctccattttccttgaattaa |
18357524 |
T |
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| Q |
505 |
gccatgatgatg |
516 |
Q |
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| T |
18357523 |
gccatgatgatg |
18357512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 5 - 467
Target Start/End: Complemental strand, 18346194 - 18345724
Alignment:
| Q |
5 |
cactcacctttaatcttgcttcaaggctcctcatattggaatcagggttagacagtttcctagactccactatagatattgatgagttcaatgcaatgaa |
104 |
Q |
| |
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|||||||||| |||||||||||||||||| ||| |||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
18346194 |
cactcaccttcaatcttgcttcaaggctcatcaaattggaattagggttagacagtttcctagattccactatagacgttgatgagttcaatgcaatgaa |
18346095 |
T |
|
| Q |
105 |
cacaagagcaagagcaacaagaacaaatattttatgagaggaagccattttagtattagaagaaattttttatatttctatatatgatgagtttggattg |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
18346094 |
cacaagagcaagagcaacaagaacaaatattttatgagaggaagccattttagtattagaagaaattttttatatatctatatatgacgagtttggattg |
18345995 |
T |
|
| Q |
205 |
ttatggtgaaacttacttagggtcttatatatata--------gtagctaactagggggagcaaataattagtaacggtaggttgatgggggagatgaag |
296 |
Q |
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| T |
18345994 |
ttatggtgaaagttacttagggttatatatatatatatatatagtagctaagtagggggagtaaataattagtaacggtaggttgatgggggagatgaag |
18345895 |
T |
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| Q |
297 |
ggtaaacataaatgtgcagtggttacataagaaaagtgtatatgaaagattgaggatgttcatattctctatgatggagatataacagcaataataaccg |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
18345894 |
ggtaaacataaatgtgcagtggttacataagaaaagtgtatatgaaagattgaggatgttcatattctctatgatggagatataacagtaataataactg |
18345795 |
T |
|
| Q |
397 |
ggttgaatttaaatgacaattgattctatagtctatttgtctccattagggcacgatgaacatttgggtaa |
467 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
18345794 |
ggttgaatttaaatgacaattgattctatagtctatttgtctccattagggcacgatgaacatttgtgtaa |
18345724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 470 - 514
Target Start/End: Complemental strand, 18343551 - 18343507
Alignment:
| Q |
470 |
ttctaattcaaaaatctccattttccttgaattaagccatgatga |
514 |
Q |
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| T |
18343551 |
ttctaattcaaaaatctccattttccttgaattaagccatgatga |
18343507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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