View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18748_low_5 (Length: 500)
Name: NF18748_low_5
Description: NF18748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18748_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 19 - 484
Target Start/End: Complemental strand, 1886218 - 1885753
Alignment:
| Q |
19 |
ggaatgattgtggtgtcgcctcgagaagtgtttttcggtttgtaaccattggttgagtaaaggattcaacatctttcaaagaagggttggatagtgcagt |
118 |
Q |
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| T |
1886218 |
ggaatgattgtggtgtcgcctcgagaagtgtttttcggtttgtaaccattggttgagtaaaggattcaacatctttcaaagaagggttggatagtgcagt |
1886119 |
T |
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| Q |
119 |
acttatctttacctgttctgcaaataggacttgcacaactaccctcaatggaagcctttcattttgtgcagcatgcatgcatgcatcaattgagagtttc |
218 |
Q |
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| T |
1886118 |
acttatctttacctgttctgcaaataggacttgcacaactaccctcaatggaagcctttcattttgtgcagcatgcatgcatgcatcaattgagagtttc |
1886019 |
T |
|
| Q |
219 |
tggcaatccattacgcggcagagtcgcttcctttcatgctcagaaagtgttggatgtgcctgttagtttacttcactgataagaaatctagcagcagaaa |
318 |
Q |
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| T |
1886018 |
tggcaatccattacgcggcagagtcgcttcctttcatgctcagaaagtgttggatgtgcctgttagtttacttcactgataagaaatccagcagcagaaa |
1885919 |
T |
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| Q |
319 |
tctaatgtaataaaatttaagctgagctaccatacattcatcatcaatatacttttgatcctaatatttgagtgaatcaccaaagttgtccctaaaataa |
418 |
Q |
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| T |
1885918 |
tctaatgtaataaaatttaagctgagctaccatacattcatcatcaatatacttttgatcctaatatttgagtgaatcaccaaagttgtccctaaaataa |
1885819 |
T |
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| Q |
419 |
tacgatattgtcaacttagtctataaaatagtctttgaattgagaatcctcgaccacattattcct |
484 |
Q |
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| T |
1885818 |
tacgatattgtcaacttagtctataaaatagtctttgaattgagaatcctcgaccacattattcct |
1885753 |
T |
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Back To:
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Target: chr4 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 104 - 283
Target Start/End: Original strand, 37213274 - 37213453
Alignment:
| Q |
104 |
gttggatagtgcagtacttatctttacctgttctgcaaataggacttgcacaactaccctcaatggaagcctttcattttgtgcagcatgcatgcatgca |
203 |
Q |
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| T |
37213274 |
gttggctagtgcattgcttatctttacttgctcagagaataaaacttgcactactacccttaatggcagtcgttcgttttgagctgcgtgcatgcaggcg |
37213373 |
T |
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| Q |
204 |
tcaattgagagtttctggcaatccattacgcggcagagtcgcttcctttcatgctcagaaagtgttggatgtgcctgtta |
283 |
Q |
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| T |
37213374 |
tcaatggagagtttttgacaatccattacacggcagagacgcttcctttcgtgctcagttagtgttggatgtgcctgtta |
37213453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 37860913 - 37860873
Alignment:
| Q |
177 |
tcattttgtgcagcatgcatgcatgcatcaattgagagttt |
217 |
Q |
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| T |
37860913 |
tcattttgtgcagcatgtatgcatgcatcaagtgagagttt |
37860873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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