View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18748_low_6 (Length: 489)
Name: NF18748_low_6
Description: NF18748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18748_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 220 - 428
Target Start/End: Original strand, 26799425 - 26799633
Alignment:
| Q |
220 |
gtcatttgataaggatctcctatccacatatagttcaacctacaaatcgtcatgagccgattatgttgtagcagccgcaccaaacaacgaattcgttcgg |
319 |
Q |
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| T |
26799425 |
gtcatttcataaggatctcctatccacatatagttcaacctgcaaatcgtcatgagccgattatgttgtagcagccgcaccaaacaacgaattcgttcgg |
26799524 |
T |
|
| Q |
320 |
caacccataacttccatacacgagaccaaggtgaatcaccaccaattcggttgaaaccacataatttctcataagcataagcaacaaaaaattacttgag |
419 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
26799525 |
caacccattacttccatacacgagaccaaggtgaatcaccaccaattcggttgaaaccacataacctctcataagcataagcaacaaaaaattacttgag |
26799624 |
T |
|
| Q |
420 |
accatttct |
428 |
Q |
| |
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||||||||| |
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| T |
26799625 |
accatttct |
26799633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 15 - 216
Target Start/End: Original strand, 26798754 - 26798958
Alignment:
| Q |
15 |
atactaaaaataacaaactaat--gagtataa-aatgcttatataacaaacaagtgaaacctccatcacaagctatatatttgcaagtgcatcggcacaa |
111 |
Q |
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|||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26798754 |
atactaaaaataacaaactaatatgagtaggacaatgcttatataacaaacaagtgaaacctccatcacaagctatatatttgcaagtgcatcggcacaa |
26798853 |
T |
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| Q |
112 |
gcattaggttctatgtacgaatgacaaatttggaccttccaattcatatcaaacaaccgtctaatatgctgcaataaactccaacctattgttgtttcca |
211 |
Q |
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| T |
26798854 |
gcatttggttctatgtacgaatcacaaatttggaccttccaattcatatcgaacaactgtctaatatgttgcaataaactccaacctattgttgtttcct |
26798953 |
T |
|
| Q |
212 |
ctttc |
216 |
Q |
| |
|
||||| |
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| T |
26798954 |
ctttc |
26798958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 107 - 195
Target Start/End: Original strand, 32057424 - 32057512
Alignment:
| Q |
107 |
cacaagcattaggttctatgtacgaatgacaaatttggaccttccaattcatatcaaacaaccgtctaatatgctgcaataaactccaa |
195 |
Q |
| |
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||||| |||||| |||||||| ||||||||||||| |||||| | |||||||||| ||| ||||||||||| ||||||||||||||| |
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| T |
32057424 |
cacaaacattagcttctatgtgcgaatgacaaattcggacctcctaattcatatctaacggtcgtctaatatgttgcaataaactccaa |
32057512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 471
Target Start/End: Original strand, 26799729 - 26799762
Alignment:
| Q |
438 |
agaacaataatacatgtacaccttcatttcttct |
471 |
Q |
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||||||||||||||||| |||||||||||||||| |
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|
| T |
26799729 |
agaacaataatacatgtccaccttcatttcttct |
26799762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 108 - 196
Target Start/End: Original strand, 13226807 - 13226895
Alignment:
| Q |
108 |
acaagcattaggttctatgtacgaatgacaaatttggaccttccaattcatatcaaacaaccgtctaatatgctgcaataaactccaac |
196 |
Q |
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|||||||||| ||||||||||||||||| ||||| || || |||||||||||| |||||||||| |||||| | |||||||||||||| |
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| T |
13226807 |
acaagcattaacttctatgtacgaatgacgaatttagatctcccaattcatatccaacaaccgtcaaatatgttacaataaactccaac |
13226895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 66 - 216
Target Start/End: Complemental strand, 33004429 - 33004281
Alignment:
| Q |
66 |
tgaaacctccatcacaagctatatatttgcaagtgcatcggcacaagcattaggttctatgtacgaatgacaaatttggaccttccaattcatatcaaac |
165 |
Q |
| |
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|||||| ||| ||||||||||||| ||||||| |||||| |||| ||||| |||| |||| |||||||||| ||||||| ||||||||| || ||| |
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| T |
33004429 |
tgaaacatccgtcacaagctatat--ttgcaagagcatcgacacatacattaacttctttgtaaaaatgacaaatctggacctcccaattcatgtctaac |
33004332 |
T |
|
| Q |
166 |
aaccgtctaatatgctgcaataaactccaacctattgttgtttccactttc |
216 |
Q |
| |
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|||||| ||||||| ||||||||||| ||| |||||| || |||||||| |
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| T |
33004331 |
aaccgtttaatatgttgcaataaactttaacatattgtcattcccactttc |
33004281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 106 - 217
Target Start/End: Complemental strand, 5199471 - 5199360
Alignment:
| Q |
106 |
gcacaagcattaggttctatgtacgaatgacaaatttggaccttccaattcatatcaaacaaccgtctaatatgctgcaataaactccaacctattgttg |
205 |
Q |
| |
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|||||| |||||| |||| |||| |||||||||||| |||| | |||||||| | ||||||||||||||||| ||||||||||| |||| | |||| | |
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| T |
5199471 |
gcacaaacattagcttctctgtatgaatgacaaattcagacccccaaattcatacccaacaaccgtctaatatgttgcaataaacttcaacatgttgtcg |
5199372 |
T |
|
| Q |
206 |
tttccactttca |
217 |
Q |
| |
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|||||| ||||| |
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| T |
5199371 |
tttccattttca |
5199360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 87 - 201
Target Start/End: Original strand, 16240467 - 16240580
Alignment:
| Q |
87 |
tatatttgcaagtgcatcggcacaagcattaggttctatgtacgaatgacaaatttggaccttccaattcatatcaaacaaccgtctaatatgctgcaat |
186 |
Q |
| |
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|||||||||||||| || |||||| |||||| || |||||||||||||||||| || ||||||| ||| | | |||||| ||| ||||||||||||| |
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| T |
16240467 |
tatatttgcaagtgtgtcagcacaaacattagcttttatgtacgaatgacaaatccaga-cttccaaatcaaacccaacaactgtcgaatatgctgcaat |
16240565 |
T |
|
| Q |
187 |
aaactccaacctatt |
201 |
Q |
| |
|
|||||||||| |||| |
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|
| T |
16240566 |
aaactccaacatatt |
16240580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 203
Target Start/End: Complemental strand, 51253451 - 51253393
Alignment:
| Q |
145 |
accttccaattcatatcaaacaaccgtctaatatgctgcaataaactccaacctattgt |
203 |
Q |
| |
|
|||| |||||||||||| ||||| |||||| ||| ||||||||||||||||||||||| |
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| T |
51253451 |
acctcccaattcatatcgaacaatcgtctattatattgcaataaactccaacctattgt |
51253393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 1881946 - 1882016
Alignment:
| Q |
45 |
aatgcttatataacaaacaagtgaaacctccatcacaagctatatatttgcaagtgcatcggcacaagcatta |
117 |
Q |
| |
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|||||| |||||||| ||||||| |||||||||||||| ||||||||||||||| || |||||||||||| |
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| T |
1881946 |
aatgctcatataacatcaaagtgaatcctccatcacaagc--tatatttgcaagtgcgtcagcacaagcatta |
1882016 |
T |
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