View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18748_low_8 (Length: 444)
Name: NF18748_low_8
Description: NF18748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18748_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 33449112 - 33449531
Alignment:
| Q |
1 |
tttcattttagattgtttgtacacatatgtagccctttttcactctctgtaacatacatatgcttgaagtttctcacttcagacatttctatgaattcat |
100 |
Q |
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| T |
33449112 |
tttcattttagattgtttgtacacatatgtagcccttgttcactctctgtaacatacatatgcttgaagtttctcacttcagacatttctatgaattcat |
33449211 |
T |
|
| Q |
101 |
aatgaatagatgaagcttaatattgaggcactcactaacatgctactagatagctatgtaaaactcacaaatatgttagtactctaaatccagaagatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||| |||||||||||||| |
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| T |
33449212 |
aatgaatagatgaagcttaatattgaggcactcactaacatgctactagatagctatgtaaaacgcacaaatatgttattgctctcaatccagaagatca |
33449311 |
T |
|
| Q |
201 |
attttttggaaatttttgctgtcnnnnnnngaaatttattggaaatcttatgcattttgaaactcattatgatatgatagtattattttaannnnnnngg |
300 |
Q |
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| T |
33449312 |
attttttggaaatttttgctgtcaaaaaaagaaatttattggaaatcttatgcattttgaaactcattatga--------tattattttaatttttttgg |
33449403 |
T |
|
| Q |
301 |
tatgtaggcgaaatggcaagcaatttctaaaaattaatacccacggccgttaacaatttgacaataccgaaattgctagttaaactaggacacaattctt |
400 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33449404 |
tatgtaggcgaagtggcaagcaatttctaaaaattaatacccacggccgttaacaatttgacaatatcgaaattgctagttaaactaggacacaattctt |
33449503 |
T |
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| Q |
401 |
tctaattaattgattgaaaagtcaatcc |
428 |
Q |
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| T |
33449504 |
tctaattaattgattgaaaagtcaatcc |
33449531 |
T |
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