View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18748_low_9 (Length: 383)
Name: NF18748_low_9
Description: NF18748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18748_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 10 - 377
Target Start/End: Complemental strand, 8251211 - 8250853
Alignment:
| Q |
10 |
catcatcacacaaaaatcatgactatactctcagccatattttgctgcttcaagtctgaagaagaagaagataagagtactcatgtggtggtggaagcag |
109 |
Q |
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| T |
8251211 |
catcatcacacaaaaatcatgactatactctcagccatattctgctgcttcaagtctgaagaagaaga---taagagtactcatgtggtggtggaagcag |
8251115 |
T |
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| Q |
110 |
gttctttgtcaaagaaacccaaaggggaacctcaacgatcttcagctcctattgttgtttcttattttcctgttaattctcaaccttctcgtttg---ta |
206 |
Q |
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| T |
8251114 |
gttctttgtcaaagaaacccaaaggggaacctcaacgatcttcagctcctattgttgtttcttatttccctgttaattctcaaccttctcgtttgtagta |
8251015 |
T |
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| Q |
207 |
gttgtgcatttaatttgtagatgcaaaacttgtgttcttaactctaattatggttgttgattactctatcacttgctacaagttgatttcacaattttgt |
306 |
Q |
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| T |
8251014 |
gttgtccatctaatttgtagatgtaaaacttgtgttctcaactctaattatggttgtttctta--ctgtcacttgctacaagttgatttcacaattttgt |
8250917 |
T |
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| Q |
307 |
aagattttgtatataatcaataatctgtatttaattttgacttcccatacactttttgtttggaaccaatc |
377 |
Q |
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| T |
8250916 |
aagattttgtat-------atgatctgtgttcaattttgacttcccattcactttttgtttggaaccaatc |
8250853 |
T |
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