View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18749_high_18 (Length: 290)
Name: NF18749_high_18
Description: NF18749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18749_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 3 - 275
Target Start/End: Original strand, 39538448 - 39538720
Alignment:
| Q |
3 |
gatgtcgaagaatatgatatttatttttaggtgtaaataaagtcaaaacataatttttactcttaaatctactgtctaacttattttaatgtacatgtat |
102 |
Q |
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|||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
39538448 |
gatgtcgactaacatgatatttatttttagatgtaaataaagtcaaaacataatttttactcttaaatctattgtctaacttgttttaatgtacatgtat |
39538547 |
T |
|
| Q |
103 |
ccaaacataaatgatttgacattctgacaactttttagtaaaaccaattatacataatcaannnnnnncactgtataaataaacatgcactagagaataa |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
39538548 |
tcaaacataaatgatttgacattctgacaactttttagtaaaaccaattatacataatcaatttttttcaccgtataaataaacatgcactagagaataa |
39538647 |
T |
|
| Q |
203 |
aaggaagggagtcatatgataatttgttaaataatacatagagcctaaaaggggtttgatgatacttgtatct |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39538648 |
aaggaagggagtcatatgataatttgttaaataatacatagagcctaaaaggggtttgatgatacttgtatct |
39538720 |
T |
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