View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18749_high_25 (Length: 238)
Name: NF18749_high_25
Description: NF18749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18749_high_25 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 9 - 238
Target Start/End: Complemental strand, 43144743 - 43144514
Alignment:
| Q |
9 |
acatcatcatgaatagaacattaaagtttctaatctaacattgcagctaagttgaaaaataacccaattcagcatcagaattctgccaaaatgttcacat |
108 |
Q |
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| T |
43144743 |
acataatcatgaatagaacattaaagtttctaatctaacattgcagctaagttgaaaaataacccaattcagcatcagaattctgccaaaatgttcacat |
43144644 |
T |
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| Q |
109 |
gaatcaacactaacaacctacctaaaaagaaaaattattgtgctcaccagcagcagaataggccatttcttcaagtgagtatcccttactataaaatcta |
208 |
Q |
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| T |
43144643 |
gaatcaacactaacaacctacctaaaaagaaaaattattgtgctcaccagcagcagaataggccatttcttcaagtgagtatcccttactataaaatcta |
43144544 |
T |
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| Q |
209 |
aatactgctgcaagatgaatcattgccatc |
238 |
Q |
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| T |
43144543 |
aatactgctgcaagatgaatcattgccatc |
43144514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 42 - 234
Target Start/End: Complemental strand, 43157072 - 43156879
Alignment:
| Q |
42 |
tctaacattgcagctaagttgaaaaataaccca-attcagcatcagaattctgccaaaatgttcacatgaatcaacactaacaacctacctaaaaagaaa |
140 |
Q |
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| T |
43157072 |
tctaacactgcaactaaattgaacaataacgcatattcagcatcagaatcctcccaaaatgttcacatgaatcaacactaacaacctaccaaaaaaggaa |
43156973 |
T |
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| Q |
141 |
aattattgtgctcaccagcagcagaataggccatttcttcaagtgagtatcccttactataaaatctaaatactgctgcaagatgaatcattgc |
234 |
Q |
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| T |
43156972 |
aagtagtgtgctcaccagcagaagtataggccgtttcttcaagtgaatatccgttactataaaatctaaatgctgctgcaagatgaatcgttgc |
43156879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 196
Target Start/End: Original strand, 33832991 - 33833073
Alignment:
| Q |
114 |
aacactaacaacctacctaaaaagaaaaattattgtgctcaccagcagcagaataggccatttcttcaagtgagtatccctta |
196 |
Q |
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||||||||||||||||||||||||||||| | ||| ||||||| ||| || ||||||||||| || | |||||| |||||| |
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| T |
33832991 |
aacactaacaacctacctaaaaagaaaaagttgtgttctcaccaccagaagtgtaggccatttcctcgactgagtaaccctta |
33833073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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