View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18749_high_6 (Length: 430)
Name: NF18749_high_6
Description: NF18749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18749_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 8 - 415
Target Start/End: Original strand, 33903225 - 33903632
Alignment:
| Q |
8 |
ccaagaatatattaaccctatataatctttagacaatcatgtgatagttatttgacatacttggtggcagaattctggatacacagtaggaatggtagga |
107 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33903225 |
ccaaaaatatattaaccctatataatctttagacaatcttgtgatagttatttgacatacttggtggcagaattctggatacacagtaggaatggtagga |
33903324 |
T |
|
| Q |
108 |
gatggtatcaatgattcaccagcactagtagcagctgatgttggaatggcaattggtgctggaacagacattgctattgaagcagctgacattgttctaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
33903325 |
gatggtatcaatgattcaccagcactagtagcagctgatgttggaatggcaattggtgctggaacagacattgctattgaagcagctgacattgttctta |
33903424 |
T |
|
| Q |
208 |
tgaagagtaacttagaggatataataattgccattgaccttgcaaagaaaactttctcacgtatacgtctaaattatatttgggctttaggttataatat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33903425 |
tgaagagtaacttagaggatataataattgccattgaccttgcaaagaaaactttctcacgtatacgtctaaattatatttgggctttaggttataatat |
33903524 |
T |
|
| Q |
308 |
tctagccattcctattgctgctggcatactttatccttctactaaatttaggttaccaccttggattgctggagctgcaatggctgcttcttctatcagt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33903525 |
tctagccattcctattgctgctggcatactttttccttctactaaatttaggttaccaccttggattgctggagctgcaatggctgcttcttctatcagt |
33903624 |
T |
|
| Q |
408 |
gttgtttg |
415 |
Q |
| |
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|||||||| |
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|
| T |
33903625 |
gttgtttg |
33903632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 8 - 415
Target Start/End: Original strand, 33920215 - 33920622
Alignment:
| Q |
8 |
ccaagaatatattaaccctatataatctttagacaatcatgtgatagttatttgacatacttggtggcagaattctggatacacagtaggaatggtagga |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33920215 |
ccaaaaatatattaaccctatataatctttagacaatcatgtgatagttatttgacatacttggtggcagaattctggatacacagtaggaatggtagga |
33920314 |
T |
|
| Q |
108 |
gatggtatcaatgattcaccagcactagtagcagctgatgttggaatggcaattggtgctggaacagacattgctattgaagcagctgacattgttctaa |
207 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
33920315 |
gatggtataaatgattcaccagcactagtagcagctgatgttggaatggcaattggtgctggaacagacattgctattgaagcagctgacattgttctta |
33920414 |
T |
|
| Q |
208 |
tgaagagtaacttagaggatataataattgccattgaccttgcaaagaaaactttctcacgtatacgtctaaattatatttgggctttaggttataatat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33920415 |
tgaagagtaacttagaggatataataattgccattgaccttgcaaagaaaactttctcacgtatacgtctaaattatatttgggctttaggttataatat |
33920514 |
T |
|
| Q |
308 |
tctagccattcctattgctgctggcatactttatccttctactaaatttaggttaccaccttggattgctggagctgcaatggctgcttcttctatcagt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33920515 |
tctagccattcctattgctgctggcatactttttccttctactaaatttaggttaccaccttggattgctggagctgcaatggctgcttcttctatcagt |
33920614 |
T |
|
| Q |
408 |
gttgtttg |
415 |
Q |
| |
|
|||||||| |
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|
| T |
33920615 |
gttgtttg |
33920622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 220
Target Start/End: Original strand, 3527129 - 3527208
Alignment:
| Q |
141 |
gctgatgttggaatggcaattggtgctggaacagacattgctattgaagcagctgacattgttctaatgaagagtaactt |
220 |
Q |
| |
|
||||||||||| |||||||||||||||||||| || | ||||| ||||| ||||| || ||||| || || |||||||| |
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| T |
3527129 |
gctgatgttggtatggcaattggtgctggaactgatgtagctatagaagctgctgatatagttctgatcaaaagtaactt |
3527208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 80 - 416
Target Start/End: Complemental strand, 2774573 - 2774237
Alignment:
| Q |
80 |
ttctggatacacagtaggaatggtaggagatggtatcaatgattcaccagcactagtagcagctgatgttggaatggcaattggtgctggaacagacatt |
179 |
Q |
| |
|
|||||||||||| || | ||||| || || |||||||||||||| || ||||| |||||||| || || ||||||||||| |||||||| ||||||||| |
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| T |
2774573 |
ttctggatacacggtggctatggtgggggacggtatcaatgattcgcctgcacttgtagcagcagacgtgggaatggcaataggtgctggcacagacatt |
2774474 |
T |
|
| Q |
180 |
gctattgaagcagctgacattgttctaatgaagagtaacttagaggatataataattgccattgaccttgcaaagaaaactttctcacgtatacgtctaa |
279 |
Q |
| |
|
|||||||| |||||||| ||||| ||||||||||| ||||| |||||| | |||| ||||||||| ||| ||| |||||||| | |||||||| || | |
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|
| T |
2774473 |
gctattgaggcagctgatattgtactaatgaagagcaacttggaggatgtcataactgccattgatctttcaagaaaaactttatttcgtatacgcctca |
2774374 |
T |
|
| Q |
280 |
attatatttgggctttaggttataatattctagccattcctattgctgctggcatactttatccttctactaaatttaggttaccaccttggattgctgg |
379 |
Q |
| |
|
||||| |||||||||| ||||||||| | || | |||||| || || ||||| | |||| |||||||| ||| |||| || |||||||| ||||| |
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|
| T |
2774373 |
attatgtttgggctttgggttataatttgcttggcattccaatagcagctggagttcttttcccttctacaggctttcggttgccgccttggatcgctgg |
2774274 |
T |
|
| Q |
380 |
agctgcaatggctgcttcttctatcagtgttgtttgt |
416 |
Q |
| |
|
|||||| |||||||| |||||| ||||||| |||||| |
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|
| T |
2774273 |
agctgctatggctgcctcttctgtcagtgtagtttgt |
2774237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 15211722 - 15211796
Alignment:
| Q |
98 |
aatggtaggagatggtatcaatgattcaccagcactagtagcagctgatgttggaatggcaattggtgctggaac |
172 |
Q |
| |
|
|||||| || ||||| ||||| ||||| |||||| ||| || ||||||||||| ||||||||||| |||||||| |
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|
| T |
15211722 |
aatggtgggcgatggcatcaacgattctccagcattagctgctgctgatgttggcatggcaattggggctggaac |
15211796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 190
Target Start/End: Original strand, 38749116 - 38749208
Alignment:
| Q |
98 |
aatggtaggagatggtatcaatgattcaccagcactagtagcagctgatgttggaatggcaattggtgctggaacagacattgctattgaagc |
190 |
Q |
| |
|
|||||| || |||||||| |||||||| || ||| ||| || || |||||||| ||||||||||| ||||| ||||| ||||| || ||||| |
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|
| T |
38749116 |
aatggtgggtgatggtataaatgattctcctgcattagctgctgcagatgttggtatggcaattggagctgggacagatattgcaatagaagc |
38749208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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