View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18749_low_10 (Length: 363)
Name: NF18749_low_10
Description: NF18749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18749_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 349
Target Start/End: Complemental strand, 46448006 - 46447669
Alignment:
| Q |
16 |
atcaataattaacacattaagaaatcaatttagagaaatatacataatacacacctggtacggatcaaagctatcactttcagataccttaagaaaagta |
115 |
Q |
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| T |
46448006 |
atcaataattcacacattaagaaatcaatttagagaaatatacataatacacacctggtacggatcaaagctatcactttcagataccttaagaaaagta |
46447907 |
T |
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| Q |
116 |
gccaaacaaataagctgatagagaaaggnnnnnnnnnnnnnnnn-----tatatatatagttagagagttaattaggtttagagatgtaaaaagagtaga |
210 |
Q |
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| T |
46447906 |
gccaaacaaataagctgatagagaaaggaaaacaaaacaaaaaaaaaaatagatatatagttagagagttaattaggtttggagatgtaaaaagagtaga |
46447807 |
T |
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| Q |
211 |
gaggtgtaattagcagcaagcaacctttactaatgctgtggcgagataaacaactgcggctttgatagaagtaccgagtgtatcatactcagatctgaat |
310 |
Q |
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| T |
46447806 |
gaggtgtaattagcagcaagcaacctttactaatgctgtggcgagataaacaactgcggctttgatagaagtaccgagtgtatcatactcagatctgaat |
46447707 |
T |
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| Q |
311 |
caaattcaaactattattatatttagttttacatgatac |
349 |
Q |
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| T |
46447706 |
caaattcaaactattattatatttagtttt-catgatac |
46447669 |
T |
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