View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18749_low_11 (Length: 346)
Name: NF18749_low_11
Description: NF18749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18749_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 16 - 328
Target Start/End: Original strand, 32740047 - 32740355
Alignment:
| Q |
16 |
atgaacataattgaaactaacaaaaaatgaaactaaatttgttaactaataatgaacataattgacatgcttgaaaagaacagtatatattcctgcttta |
115 |
Q |
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| T |
32740047 |
atgaacataattgaaactaacaaaaaatgaaactaaatttgttaactaataatgaacataattgacatgcttgaaaagaacagtatatattcctgcttta |
32740146 |
T |
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| Q |
116 |
gctgtgtgattggaatatattcatagcttaagcaagcctaatttattgatttggatttggaatgaaatgnnnnnnngaaagcagaaaattaaacagtggc |
215 |
Q |
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| T |
32740147 |
gctgtgtgattggaatatattcatagcttaagcaagcctaatttattgatttggatttggaatgaaatg-aaaaaagaaagcagaaaattaaacagtggc |
32740245 |
T |
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| Q |
216 |
atagatattgctagcagagtgttataatagactaaacattcaaaataaaacagtggcataaaggccatccggtaaaaaccaaagatcattcctttcaata |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32740246 |
atagatattgctagcagagtgttataatagactaaacattcaatataaaacagtggcataaaggccatccggtaaaaaccaaagatcattcctttc---a |
32740342 |
T |
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| Q |
316 |
ttgatatgggaat |
328 |
Q |
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||||||||||||| |
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| T |
32740343 |
ttgatatgggaat |
32740355 |
T |
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