View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18749_low_12 (Length: 336)
Name: NF18749_low_12
Description: NF18749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18749_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 317
Target Start/End: Complemental strand, 33520407 - 33520103
Alignment:
| Q |
11 |
cgaagaatatcctgcaacaaattttgagcagtcatccatgatatattaaccaattcataactccagcccaaatttacataccaaaaaactaccttcaaat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33520407 |
cgaagaatatcctgcaacaaattttgagcagtcatccatgatatattaaccaattcataactccagcccaaatttacataccaaaaaactaccttcaaat |
33520308 |
T |
|
| Q |
111 |
agtcactcctttctttatctcttaattcatattgaagtgtttgatatcacacaagtgatcaagcaaaaacatatnnnnnnnnntaatgagatcatataat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33520307 |
agtcactcctttctttatctcttaattcatattgaagtgtttgatatcacacaagtgatcaagcaaaaacatataaaaaaaa--aatgagatcatataat |
33520210 |
T |
|
| Q |
211 |
gttattgagtattcacgcaccattttctgtaatatacatgggcatgttatgatattttatctttatgtagcctacaatattctccatgccctttggaact |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
33520209 |
gttattgagtattcacgcaccattttctgtaatatacatgggcatgttatgatattttatctttatgtagtctacaatcttctccatgccctttggaact |
33520110 |
T |
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| Q |
311 |
acaaaga |
317 |
Q |
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||||||| |
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| T |
33520109 |
acaaaga |
33520103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 11 - 317
Target Start/End: Original strand, 33495647 - 33495952
Alignment:
| Q |
11 |
cgaagaatatcctgcaacaaattttgagcagtcatccatgatatattaaccaattcataactccag-cccaaatttacataccaaaaaactaccttcaaa |
109 |
Q |
| |
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|||||||||||||||||||||||||| || ||||||| ||||||||||||||||| | |||| |||||||||||||| |||||||| ||||||||| |
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| T |
33495647 |
cgaagaatatcctgcaacaaattttgtatagccatccatcatatattaaccaattcaaacttccatacccaaatttacataacaaaaaaccaccttcaaa |
33495746 |
T |
|
| Q |
110 |
tagtcactcctttctttatctcttaattcatattgaagtgtttgatatcacacaagtgatcaagcaaaaacatatnnnnnnnnntaatgagatcatataa |
209 |
Q |
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|||||||||||||||| |||| |||| |||||| ||||||||||||| | |||||||||||||||||||||||| ||||||||||||||| |
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| T |
33495747 |
gagtcactcctttctttgtctcataatgcatattaaagtgtttgatattaaacaagtgatcaagcaaaaacatataaaaagaa--aatgagatcatataa |
33495844 |
T |
|
| Q |
210 |
tgttattgagtattcacgcaccattttctgtaatatacatgggcatgttatgatattttatctttatgtagcctacaatattctccatgccctttggaac |
309 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||| ||| || |||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
33495845 |
tgttattgagtattcacacaccattttctgtaatatacatgggcaggttttggtattttatctttatgtagtctacaatcttctccatgccctttggaac |
33495944 |
T |
|
| Q |
310 |
tacaaaga |
317 |
Q |
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||||||| |
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| T |
33495945 |
cacaaaga |
33495952 |
T |
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