View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18749_low_13 (Length: 335)
Name: NF18749_low_13
Description: NF18749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18749_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 1164131 - 1163930
Alignment:
| Q |
1 |
taatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1164131 |
taatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccac |
1164032 |
T |
|
| Q |
101 |
tgtttcttaaagtctgatcagtactggaatgcacccttcactccttcattctctaggcctcagttagtggaatatgctgttctcggtattgagaaattag |
200 |
Q |
| |
|
|||||||||||| ||| ||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1164031 |
tgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctctaggcctcagttagtggaatatgctgttctcggtattgagaaattag |
1163932 |
T |
|
| Q |
201 |
at |
202 |
Q |
| |
|
|| |
|
|
| T |
1163931 |
at |
1163930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 1849635 - 1849836
Alignment:
| Q |
1 |
taatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
1849635 |
taatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccagaacatttactttgcttgatccatttaccttgacccgc |
1849734 |
T |
|
| Q |
101 |
tgtttcttaaagtctgatcagtactggaatgcacccttcactccttcattctctaggcctcagttagtggaatatgctgttctcggtattgagaaattag |
200 |
Q |
| |
|
|||||||||||| |||||| |||||| ||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
1849735 |
tgtttcttaaaggctgatcgttactgggatgcacccttcacgccttcattctctaggcatcagttagtggaatatgttgttctcggtatcgagaaattag |
1849834 |
T |
|
| Q |
201 |
at |
202 |
Q |
| |
|
|| |
|
|
| T |
1849835 |
at |
1849836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 3 - 190
Target Start/End: Original strand, 3299166 - 3299353
Alignment:
| Q |
3 |
atattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactg |
102 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299166 |
atattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggttgccaaaatatttactttgcttgatccatttaccttgacccactg |
3299265 |
T |
|
| Q |
103 |
tttcttaaagtctgatcagtactggaatgcacccttcactccttcattctctaggcctcagttagtggaatatgctgttctcggtatt |
190 |
Q |
| |
|
|||||||||| ||| ||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3299266 |
tttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctctaggcctcagttagtggaatatgttgttctcggtatt |
3299353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 3 - 190
Target Start/End: Original strand, 3392059 - 3392246
Alignment:
| Q |
3 |
atattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactg |
102 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392059 |
atattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggttgccaaaatatttactttgcttgatccatttaccttgacccactg |
3392158 |
T |
|
| Q |
103 |
tttcttaaagtctgatcagtactggaatgcacccttcactccttcattctctaggcctcagttagtggaatatgctgttctcggtatt |
190 |
Q |
| |
|
|||||||||| ||| ||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3392159 |
tttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctctaggcctcagttagtggaatatgttgttctcggtatt |
3392246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 38987366 - 38987556
Alignment:
| Q |
1 |
taatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccac |
100 |
Q |
| |
|
|||| ||| ||||||||| ||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38987366 |
taatgttgttgcttctttgggtccaaatattggtcctattgtcatatgcactagggttgccaaaacatttactttgcttgatccatttaccttgacccac |
38987465 |
T |
|
| Q |
101 |
tgtttcttaaagtctgatcagtactggaatgcacccttcactccttcattctctaggcctcagttagtggaatatgctgttctcggtattg |
191 |
Q |
| |
|
||||||||| | || ||||||||||||| ||||| ||||| | ||||||| |||| |||||||||| ||||||| |||||||| ||||| |
|
|
| T |
38987466 |
tgtttcttagatgctcatcagtactggaaagcaccattcacacattcattcaataggactcagttagtcgaatatgttgttctcgatattg |
38987556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 227 - 335
Target Start/End: Complemental strand, 1163902 - 1163794
Alignment:
| Q |
227 |
aataaacagaagaagaagctggtttttaaggatgaacatgatgaagatggtgatgcttttgctacttatactgctgctgccaaaaaatatcgtttagcta |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1163902 |
aataaacagaagaagaagctggtttttaaggatgaacatgatgaagatggtgatgcttttgctacttatactgctgctgccaaaaaatatcgtttagcta |
1163803 |
T |
|
| Q |
327 |
atgccatag |
335 |
Q |
| |
|
||||||||| |
|
|
| T |
1163802 |
atgccatag |
1163794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 40417956 - 40418140
Alignment:
| Q |
1 |
taatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccac |
100 |
Q |
| |
|
|||| ||| ||||||||| ||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40417956 |
taatgttgttgcttctttcggtgaaaatattggtcctattgtcatttgcactagggttgccaaaacatttactttgcttgatccatttaccttgacccac |
40418055 |
T |
|
| Q |
101 |
tgtttcttaaagtctgatcagtactggaatgcacccttcactccttcattctctaggcctcagttagtggaatatgctgttctcg |
185 |
Q |
| |
|
||||||||| | || ||||||||||||| ||||| ||||| | ||||||| |||| |||||||||| ||||||| |||||||| |
|
|
| T |
40418056 |
tgtttcttagatgctcatcagtactggaaagcaccattcacacattcattcaataggactcagttagtcgaatatgttgttctcg |
40418140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 37 - 191
Target Start/End: Original strand, 39726115 - 39726269
Alignment:
| Q |
37 |
tattgttatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcaccc |
136 |
Q |
| |
|
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| ||||| |
|
|
| T |
39726115 |
tattgtcatatgcactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgctcatcagtactggaaagcacca |
39726214 |
T |
|
| Q |
137 |
ttcactccttcattctctaggcctcagttagtggaatatgctgttctcggtattg |
191 |
Q |
| |
|
||||| | ||||||| |||| |||||||||| ||||||| |||||||| ||||| |
|
|
| T |
39726215 |
ttcacacattcattcaataggactcagttagtcgaatatgttgttctcgatattg |
39726269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 37 - 191
Target Start/End: Original strand, 39879517 - 39879671
Alignment:
| Q |
37 |
tattgttatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcaccc |
136 |
Q |
| |
|
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| ||||| |
|
|
| T |
39879517 |
tattgtcatatgcactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgctcatcagtactggaaagcacca |
39879616 |
T |
|
| Q |
137 |
ttcactccttcattctctaggcctcagttagtggaatatgctgttctcggtattg |
191 |
Q |
| |
|
||||| | ||||||| |||| |||||||||| ||||||| |||||||| ||||| |
|
|
| T |
39879617 |
ttcacacattcattcaataggactcagttagtcgaatatgttgttctcgatattg |
39879671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 37 - 183
Target Start/End: Original strand, 39168603 - 39168749
Alignment:
| Q |
37 |
tattgttatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcaccc |
136 |
Q |
| |
|
||||||||| || |||||||||||||||| | ||||||| |||||||||||||||||||| | || ||||||| ||||| ||||||||||||||||| |
|
|
| T |
39168603 |
tattgttatatgcactagggttgccaaaaaaattactttacttgatccatttaccttgactgctttttccttaaaggctgatgagtactggaatgcaccc |
39168702 |
T |
|
| Q |
137 |
ttcactccttcattctctaggcctcagttagtggaatatgctgttct |
183 |
Q |
| |
|
||||| | ||||||| ||||| ||||||||||| |||||| |||||| |
|
|
| T |
39168703 |
ttcacgcattcattcactaggactcagttagtgaaatatgttgttct |
39168749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 37 - 168
Target Start/End: Original strand, 39399601 - 39399735
Alignment:
| Q |
37 |
tattgttatttgtactagggttgccaaaacatttact---ttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgca |
133 |
Q |
| |
|
|||||| || || |||||||||||||||| | ||||| |||||||||||||||||||||||| | || ||||||| ||||||| |||||||||||| |
|
|
| T |
39399601 |
tattgtcatatgcactagggttgccaaaaaaattactactttgcttgatccatttaccttgaccgctttttccttaaaggctgatcactactggaatgca |
39399700 |
T |
|
| Q |
134 |
cccttcactccttcattctctaggcctcagttagt |
168 |
Q |
| |
|
|| ||||| | ||||||| |||| |||||||||| |
|
|
| T |
39399701 |
cctttcacgcattcattcaataggactcagttagt |
39399735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 297 - 335
Target Start/End: Original strand, 1849904 - 1849942
Alignment:
| Q |
297 |
ctgctgctgccaaaaaatatcgtttagctaatgccatag |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1849904 |
ctgctgctgccaaaaaatatcgtttagctaatgccatag |
1849942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 191
Target Start/End: Original strand, 40596325 - 40596485
Alignment:
| Q |
25 |
aaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtac |
124 |
Q |
| |
|
||||||| |||||||| | ||||||| |||||| |||| | |||||||||||||| || ||||||| ||||| ||||||| |||||||||| |
|
|
| T |
40596325 |
aaatattagtcctattatcatttgta----ggttgctaaaagaattactttgcttgatt--ttcaccttgaggtactgtatcttaaatgttgatcagtac |
40596418 |
T |
|
| Q |
125 |
tggaatgcacccttcactccttcattctctaggcctcagttagtggaatatgctgttctcggtattg |
191 |
Q |
| |
|
|||||||||| ||||| |||||| || ||||| |||||||||||||||| |||| |||| ||||| |
|
|
| T |
40596419 |
tggaatgcacttttcacgccttcactcactaggagtcagttagtggaatattctgtgctcgatattg |
40596485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 333
Target Start/End: Original strand, 3299472 - 3299508
Alignment:
| Q |
297 |
ctgctgctgccaaaaaatatcgtttagctaatgccat |
333 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3299472 |
ctgctgctgccaaaaaatatcgtttagctgatgccat |
3299508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 333
Target Start/End: Original strand, 3392365 - 3392401
Alignment:
| Q |
297 |
ctgctgctgccaaaaaatatcgtttagctaatgccat |
333 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3392365 |
ctgctgctgccaaaaaatatcgtttagctgatgccat |
3392401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 25912712 - 25912538
Alignment:
| Q |
1 |
taatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccac |
100 |
Q |
| |
|
|||| ||||||||||||| || |||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
25912712 |
taatgttgctgcttctttcagtgtaaatattggtcctattgtcatttgcactagggttgccaaaacatttactttacttgatccatttaccttgactcat |
25912613 |
T |
|
| Q |
101 |
tgtttcttaaagtctgatcagtactggaatgcacccttcactccttcattctctaggcctcagttagtggaatat |
175 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||| |||| |||| |||||||||||||||| |||||| |
|
|
| T |
25912612 |
tgtttcttgaaggctgatcagtactggaatgcacccttcacgccttaattcactaggcctcagttagttgaatat |
25912538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University