View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18749_low_14 (Length: 331)
Name: NF18749_low_14
Description: NF18749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18749_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 11 - 285
Target Start/End: Complemental strand, 2361730 - 2361456
Alignment:
| Q |
11 |
cacagacaaaaacaaaacatagcttcatattcatcatgacaacaaagaaaaacactcaccgccttaaccttacaaaagaaaacacaccaaaacaaccatt |
110 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2361730 |
cacaaacaaaaacagaacatagcttcatattcatcatgacaacaaagaaaaacactcacctccttaaccttacaaaagaaaacacaccaaaacaaccatt |
2361631 |
T |
|
| Q |
111 |
tccaaaaatagtaagaataactgtcacagacaatgatgctacagattgttccagcgacgaagaagaatcatacaccacgcacttcttagaacgtaaccga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2361630 |
tccaaaaatagtaagaataactgtcacagacaatgatgctacagattgttccagcgacgaagaagaatcatacaccacgcacttcttagatcgtaaccga |
2361531 |
T |
|
| Q |
211 |
ggtataaagtttgttgatgagattatcatagagccatgtactgtgagcaagaataataacactatcagcaacggc |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2361530 |
ggtataaagtttgttgatgagattatcatagagccatgtactgtgagcaagaataataacactattagcaacggc |
2361456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 20 - 257
Target Start/End: Original strand, 8861163 - 8861400
Alignment:
| Q |
20 |
aaacaaaacatagcttcatattcatcatgacaacaaagaaaaacactcaccgccttaaccttacaaaagaaaacacaccaaaacaaccatttccaaaaat |
119 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||| || || |||||||| |||||||| || ||||||||||||||||||||||| |
|
|
| T |
8861163 |
aaacaaaacatagtttcatattcaacatgacaacaaagaaaaacactcatcgtctcaaccttactaaagaaaatactccaaaacaaccatttccaaaaat |
8861262 |
T |
|
| Q |
120 |
agtaagaataactgtcacagacaatgatgctacagattgttccagcgacgaagaagaatcatacaccacgcacttcttagaacgtaaccgaggtataaag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||| |
|
|
| T |
8861263 |
agtaagaataactgtcacagacaatgatgctacagattattccagcgacgaagaagaatcatacacgacgcgcttcttagaacgtaaccgaggtaaaaag |
8861362 |
T |
|
| Q |
220 |
tttgttgatgagattatcatagagccatgtactgtgag |
257 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8861363 |
tttgttgatgagattatcatagaaccatgtactgtgag |
8861400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University